Cucsat.G10134 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10134
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Pectate lyase
Location	ctg1673: 5962353 .. 5963261 (+)
RNA-Seq Expression	Cucsat.G10134
Synteny	Cucsat.G10134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATCTTTCTTTTTTCTTTTGTTTAATTTTGAACTCTCCAATGGCGGCTTCTTCTTCTTCTTCTTATTCCCTTTACTTTTTGTTGCTTCTTTTATCTCTTTCTTTCTTCTTGTCTATGACTGCTCCACTACCTTCCAATTCCTCCTTACCTTTTGTTCATCAACATCCTCATCTCGTCGTTGAAGAAGTTCAAAGGTATATATATACATTTTTGTTATGTACATTGGTTCTCATACATATTAAATATACTCTTGTTTTAGTTCTTGTACTTCTAAATCATTTAACTTTCGGTCATGCATGCATTTTTAAAAACAAATCTTTTATGTAACAAAGTTTTAGGGTTAAACTTGGCTCACTTGTGAAAATAAATTTATATGGGAAGAGCAGTTGTTATGATGAGTAAAATTTTAATTTGTGTTATTATTTTGTAGATCCAATTAAAATAAACCTTTTTTTAAAAGAATAAAACATGACAAGTAGACACCTTAAAAGGTGGGAATGTAATGTGACAAAGGAACAAACATTGAAAGTTTACTATTTTAAAGAATGAGCACCTAGCTAACATAGAACCAAACCTAAACTGTATTCAAAATTTTGGGGAAAATACTTCTTAGTGTATCTATGTTTTGATATACATTTGGTAATTGTATTAGTTATTATTTCTGGTTGTAAAATAAATTTGTGGTTACTGATGGCGGCACGCAGGAGCATAAATGGATCAAGAAGAAACTTGGGGTATTTATCATGTGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGATTCCAATTGGGAAACAAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTCGGCAAAAACGCAATCGGCGGCAAAAACGGCCGTTTCTACGTAGTCACTGACTCCGGGAACGACGACCCA

Coding sequence (CDS)

TTCAATCTTTCTTTTTTCTTTTGTTTAATTTTGAACTCTCCAATGGCGGCTTCTTCTTCTTCTTCTTATTCCCTTTACTTTTTGTTGCTTCTTTTATCTCTTTCTTTCTTCTTGTCTATGACTGCTCCACTACCTTCCAATTCCTCCTTACCTTTTGTTCATCAACATCCTCATCTCGTCGTTGAAGAAGTTCAAAGGAGCATAAATGGATCAAGAAGAAACTTGGGGTATTTATCATGTGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGATTCCAATTGGGAAACAAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTCGGCAAAAACGCAATCGGCGGCAAAAACGGCCGTTTCTACGTAGTCACTGACTCCGGGAACGACGACCCA

Protein sequence

FNLSFFFCLILNSPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP

Homology

[Close]

BLAST of Cucsat.G10134 vs. ExPASy Swiss-Prot
Match: O24554 (Pectate lyase OS=Zinnia violacea OX=34245 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.8e-35
Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 31  LLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCW 90
           +L L  F+S  A   S+ S     + PH +V EV +SIN SRRNLGYLSCGTGNPIDDCW
Sbjct: 5   ILPLILFISSLAIASSSPS-----RTPHAIVNEVHKSINASRRNLGYLSCGTGNPIDDCW 64

Query: 91  RCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 134
           RCD NW  NR+RLADCAIGFGKNA+GG+NGR YVVTD GNDDP
Sbjct: 65  RCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDP 102

[Close]

BLAST of Cucsat.G10134 vs. ExPASy Swiss-Prot
Match: Q9LTZ0 (Putative pectate lyase 11 OS=Arabidopsis thaliana OX=3702 GN=At3g27400 PE=3 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-33
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 18  SSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSI-NGSRRNLG 77
           S S+++  Y  LLLL++   L+       +SSLP   Q P+LVV++V RS+ N SRR+L 
Sbjct: 3   SYSNNHFAYAFLLLLTIGNTLAF------SSSLPDHVQDPNLVVDDVNRSVFNASRRSLA 62

Query: 78  YLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 134
           YLSC TGNPIDDCWRCD NWETNR+RLADCAIGFGKNAIGG+ GR YVVTD  NDDP
Sbjct: 63  YLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDP 113

[Close]

BLAST of Cucsat.G10134 vs. ExPASy Swiss-Prot
Match: Q9C5M8 (Probable pectate lyase 18 OS=Arabidopsis thaliana OX=3702 GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-30
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 30  LLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS---RRNLGYLSCGTGNPI 89
           L +++  FL + APL  +S +P     P  VVEEV +SIN S   RR LGYLSC TGNPI
Sbjct: 8   LFITIVSFL-LYAPLFLSSPVP----DPESVVEEVHKSINASVAGRRKLGYLSCTTGNPI 67

Query: 90  DDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 134
           DDCWRCD +WE +R+RLADCAIGFGKNAIGG++GR YVVTDSGND+P
Sbjct: 68  DDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNP 109

[Close]

BLAST of Cucsat.G10134 vs. ExPASy Swiss-Prot
Match: Q93Z25 (Probable pectate lyase 22 OS=Arabidopsis thaliana OX=3702 GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-30
Identity = 69/116 (59.48%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 20  SSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSING--SRRNLGY 79
           +SSY L F L+      F ++ + LP +         P LVVEEV R IN   SRR LG+
Sbjct: 25  NSSY-LSFALIFFCCILFSALASSLPVSD--------PELVVEEVHRKINESISRRKLGF 84

Query: 80  LSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 134
            SCG+GNPIDDCWRCD +WE NRKRLADC IGFGKNAIGG++G  YVVTD GNDDP
Sbjct: 85  FSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDP 131

[Close]

BLAST of Cucsat.G10134 vs. ExPASy Swiss-Prot
Match: Q9FXD8 (Probable pectate lyase 5 OS=Arabidopsis thaliana OX=3702 GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-29
Identity = 64/104 (61.54%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 29  LLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDD 88
           L+ LSLS F  +   L            P LVV+EV   IN SRRNLG LSCGTGNPIDD
Sbjct: 5   LVHLSLSLFSCLLLVLSPTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDD 64

Query: 89  CWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDD 133
           CWRCD  WE NR+RLADCAIGFGK+AIGG++G+ YVVTDS + D
Sbjct: 65  CWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKD 108

[Close]

BLAST of Cucsat.G10134 vs. NCBI nr
Match: XP_004142773.1 (pectate lyase [Cucumis sativus] >KGN51335.1 hypothetical protein Csa_008191 [Cucumis sativus])

HSP 1 Score: 240 bits (612), Expect = 1.68e-75
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 15  MAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRN 74
           MAASSSSS SLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRN
Sbjct: 1   MAASSSSSSSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRN 60

Query: 75  LGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           LGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP
Sbjct: 61  LGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 119

[Close]

BLAST of Cucsat.G10134 vs. NCBI nr
Match: XP_008458848.1 (PREDICTED: pectate lyase-like [Cucumis melo])

HSP 1 Score: 218 bits (555), Expect = 6.11e-67
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 15  MAASSSSSYSLYFLLLLLSLSFFLSM-TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRR 74
           MAASSSSS  LYFL LLLSL FFLSM TAP+PSNSSLPFVHQHPHL VEEVQRSINGSRR
Sbjct: 1   MAASSSSS--LYFLFLLLSLCFFLSMSTAPIPSNSSLPFVHQHPHLAVEEVQRSINGSRR 60

Query: 75  NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTD+ +DDP
Sbjct: 61  NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDARDDDP 118

[Close]

BLAST of Cucsat.G10134 vs. NCBI nr
Match: KAA0037617.1 (pectate lyase-like [Cucumis melo var. makuwa] >TYK09359.1 pectate lyase-like [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (501), Expect = 4.29e-59
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 41  TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNR 100
           TAP+PSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNR
Sbjct: 3   TAPIPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNR 62

Query: 101 KRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           KRLADCAIGFGKNAIGGKNGRFYVVTD+ +DDP
Sbjct: 63  KRLADCAIGFGKNAIGGKNGRFYVVTDARDDDP 95

[Close]

BLAST of Cucsat.G10134 vs. NCBI nr
Match: XP_038890725.1 (pectate lyase-like [Benincasa hispida])

HSP 1 Score: 190 bits (482), Expect = 5.00e-56
Identity = 97/120 (80.83%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 15  MAASSSSSYSLYFLLLLLSLSFFLSMT-APLPSNSSLPFVHQHPHLVVEEVQRSINGSRR 74
           MAASSS S    FL LLLSLSFF +M+ +   SNSSL  VHQHPHLVV++VQRSIN SRR
Sbjct: 1   MAASSSLS----FLFLLLSLSFFFTMSVSTTTSNSSLHSVHQHPHLVVQDVQRSINASRR 60

Query: 75  NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           NLGY SCGTGNPIDDCWRCDSNW TNRKRLADCAIGFGKNAIGGKNGRFYVVTD+G+DDP
Sbjct: 61  NLGYFSCGTGNPIDDCWRCDSNWATNRKRLADCAIGFGKNAIGGKNGRFYVVTDAGDDDP 116

[Close]

BLAST of Cucsat.G10134 vs. NCBI nr
Match: XP_022959813.1 (pectate lyase-like [Cucurbita moschata])

HSP 1 Score: 164 bits (416), Expect = 7.64e-46
Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 13  SPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR 72
           SPMAAS       +F LLLL LSFF +       +SSL  V Q PHLVV+EVQRSIN SR
Sbjct: 51  SPMAAS-------FFFLLLLPLSFFFT-------DSSLASV-QDPHLVVQEVQRSINESR 110

Query: 73  --RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGN 132
             RNLGYLSC TGNPIDDCWRCD NWETNRKRLADCAIGFGKNAIGG+NGRFYVVTD+G+
Sbjct: 111 TRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGD 158

[Close]

BLAST of Cucsat.G10134 vs. ExPASy TrEMBL
Match: A0A0A0KNX3 (Pectate lyase OS=Cucumis sativus OX=3659 GN=Csa_5G517820 PE=3 SV=1)

HSP 1 Score: 240 bits (612), Expect = 8.13e-76
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 15  MAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRN 74
           MAASSSSS SLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRN
Sbjct: 1   MAASSSSSSSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRN 60

Query: 75  LGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           LGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP
Sbjct: 61  LGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 119

[Close]

BLAST of Cucsat.G10134 vs. ExPASy TrEMBL
Match: A0A1S3C8C5 (Pectate lyase OS=Cucumis melo OX=3656 GN=LOC103498129 PE=3 SV=1)

HSP 1 Score: 218 bits (555), Expect = 2.96e-67
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 15  MAASSSSSYSLYFLLLLLSLSFFLSM-TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRR 74
           MAASSSSS  LYFL LLLSL FFLSM TAP+PSNSSLPFVHQHPHL VEEVQRSINGSRR
Sbjct: 1   MAASSSSS--LYFLFLLLSLCFFLSMSTAPIPSNSSLPFVHQHPHLAVEEVQRSINGSRR 60

Query: 75  NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTD+ +DDP
Sbjct: 61  NLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDARDDDP 118

[Close]

BLAST of Cucsat.G10134 vs. ExPASy TrEMBL
Match: A0A5D3CGC7 (Pectate lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00560 PE=3 SV=1)

HSP 1 Score: 197 bits (501), Expect = 2.08e-59
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 41  TAPLPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNR 100
           TAP+PSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNR
Sbjct: 3   TAPIPSNSSLPFVHQHPHLVVEEVQRSINGSRRNLGYLSCGTGNPIDDCWRCDSNWETNR 62

Query: 101 KRLADCAIGFGKNAIGGKNGRFYVVTDSGNDDP 133
           KRLADCAIGFGKNAIGGKNGRFYVVTD+ +DDP
Sbjct: 63  KRLADCAIGFGKNAIGGKNGRFYVVTDARDDDP 95

[Close]

BLAST of Cucsat.G10134 vs. ExPASy TrEMBL
Match: A0A6J1H707 (Pectate lyase OS=Cucurbita moschata OX=3662 GN=LOC111460762 PE=3 SV=1)

HSP 1 Score: 164 bits (416), Expect = 3.70e-46
Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 13  SPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGSR 72
           SPMAAS       +F LLLL LSFF +       +SSL  V Q PHLVV+EVQRSIN SR
Sbjct: 51  SPMAAS-------FFFLLLLPLSFFFT-------DSSLASV-QDPHLVVQEVQRSINESR 110

Query: 73  --RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSGN 132
             RNLGYLSC TGNPIDDCWRCD NWETNRKRLADCAIGFGKNAIGG+NGRFYVVTD+G+
Sbjct: 111 TRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGD 158

[Close]

BLAST of Cucsat.G10134 vs. ExPASy TrEMBL
Match: A0A6J1JPY5 (Pectate lyase OS=Cucurbita maxima OX=3661 GN=LOC111487839 PE=3 SV=1)

HSP 1 Score: 163 bits (412), Expect = 7.43e-46
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 12  NSPMAASSSSSYSLYFLLLLLSLSFFLSMTAPLPSNSSLPFVHQHPHLVVEEVQRSINGS 71
           +SPMAAS       +F LLLL LSFF +       +SSL  V Q PHLVV++VQRSIN S
Sbjct: 16  SSPMAAS-------FFFLLLLPLSFFFT-------DSSLASV-QDPHLVVQQVQRSINES 75

Query: 72  R--RNLGYLSCGTGNPIDDCWRCDSNWETNRKRLADCAIGFGKNAIGGKNGRFYVVTDSG 131
           R  RNLGYLSC TGNPIDDCWRCD NWETNRKRLADCAIGFGKNAIGG+NGRFY+VTD+G
Sbjct: 76  RIRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYMVTDAG 124

Query: 132 NDDP 133
           +DDP
Sbjct: 136 DDDP 124

The following BLAST results are available for this feature:

BLAST of Cucsat.G10134 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24554	4.8e-35	67.96	Pectate lyase OS=Zinnia violacea OX=34245 PE=1 SV=1	[more]
Q9LTZ0	3.4e-33	63.25	Putative pectate lyase 11 OS=Arabidopsis thaliana OX=3702 GN=At3g27400 PE=3 SV=2	[more]
Q9C5M8	1.2e-30	64.49	Probable pectate lyase 18 OS=Arabidopsis thaliana OX=3702 GN=At4g24780 PE=2 SV=2	[more]
Q93Z25	2.1e-30	59.48	Probable pectate lyase 22 OS=Arabidopsis thaliana OX=3702 GN=At5g63180 PE=2 SV=1	[more]
Q9FXD8	1.3e-29	61.54	Probable pectate lyase 5 OS=Arabidopsis thaliana OX=3702 GN=At1g67750 PE=2 SV=2	[more]

BLAST of Cucsat.G10134 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142773.1	1.68e-75	99.16	pectate lyase [Cucumis sativus] >KGN51335.1 hypothetical protein Csa_008191 [Cuc...	[more]
XP_008458848.1	6.11e-67	91.67	PREDICTED: pectate lyase-like [Cucumis melo]	[more]
KAA0037617.1	4.29e-59	95.70	pectate lyase-like [Cucumis melo var. makuwa] >TYK09359.1 pectate lyase-like [Cu...	[more]
XP_038890725.1	5.00e-56	80.83	pectate lyase-like [Benincasa hispida]	[more]
XP_022959813.1	7.64e-46	73.17	pectate lyase-like [Cucurbita moschata]	[more]

BLAST of Cucsat.G10134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNX3	8.13e-76	99.16	Pectate lyase OS=Cucumis sativus OX=3659 GN=Csa_5G517820 PE=3 SV=1	[more]
A0A1S3C8C5	2.96e-67	91.67	Pectate lyase OS=Cucumis melo OX=3656 GN=LOC103498129 PE=3 SV=1	[more]
A0A5D3CGC7	2.08e-59	95.70	Pectate lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00560 ...	[more]
A0A6J1H707	3.70e-46	73.17	Pectate lyase OS=Cucurbita moschata OX=3662 GN=LOC111460762 PE=3 SV=1	[more]
A0A6J1JPY5	7.43e-46	70.97	Pectate lyase OS=Cucurbita maxima OX=3661 GN=LOC111487839 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 83..133 e-value: 1.8E-13 score: 52.1
IPR045032	Pectin lyase family	PANTHER	PTHR31683	PECTATE LYASE 18-RELATED	coord: 30..133
None	No IPR available	PANTHER	PTHR31683:SF147	PECTATE LYASE	coord: 30..133
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 65..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10134.T1	Cucsat.G10134.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045490	pectin catabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030570	pectate lyase activity