Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCCCCACACGACGGACAAAACAGACCACGCCAACCGCCGATACGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG
mRNA sequence
ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCCCCACACGACGGACAAAACAGACCACGCCAACCGCCGATACGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG
Coding sequence (CDS)
ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCCCCACACGACGGACAAAACAGACCACGCCAACCGCCGATACGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG
Protein sequence
MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN
Homology
BLAST of Csor.00g302770 vs. ExPASy Swiss-Prot
Match:
Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 32/98 (32.65%), Postives = 48/98 (48.98%), Query Frame = 0
Query: 4 RRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYE 63
R +S + +L++IL + +FC +S+ A RIFP P + +
Sbjct: 5 REWRSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETP-----------ASGKRQEED 64
Query: 64 LLQKYFKDRAFLDPHRH-HEGFVDSKRKIPSCPDPLHN 101
L++KYF F +G +SKR +PSCPDPLHN
Sbjct: 65 LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91
BLAST of Csor.00g302770 vs. NCBI nr
Match:
KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 215 bits (547), Expect = 1.61e-70
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query: 1 MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR 60
MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR
Sbjct: 1 MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR 60
Query: 61 RYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
RYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN
Sbjct: 61 RYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
BLAST of Csor.00g302770 vs. NCBI nr
Match:
KAG7015490.1 (hypothetical protein SDJN02_23126, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 180 bits (457), Expect = 1.98e-56
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0
Query: 1 MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR 60
MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPP HTTDKTDHANR
Sbjct: 1 MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPLHTTDKTDHANR 60
Query: 61 RYELLQKYFKDRAFLDPHRHHEGFVDSKR 89
RYELLQKYFKDRAFLDPHRHHEGFVD ++
Sbjct: 61 RYELLQKYFKDRAFLDPHRHHEGFVDIRQ 89
BLAST of Csor.00g302770 vs. NCBI nr
Match:
KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])
HSP 1 Score: 134 bits (336), Expect = 3.01e-38
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0
Query: 1 MCTRRIAASSS------FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDK 60
M RRI SSS FAILILILWVSQIWV CC QARASRIFPPPPPPPPP H DK
Sbjct: 1 MFNRRITTSSSSSSTSAFAILILILWVSQIWV-CCHCQARASRIFPPPPPPPPP-HPADK 60
Query: 61 T----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
+ + N + +LLQKYF RAF D HRH EGF DSKRKIPSCPDPLHN
Sbjct: 61 SLSGEEKDNAKNDLLQKYFNGRAF-DRHRHDEGFEDSKRKIPSCPDPLHN 107
BLAST of Csor.00g302770 vs. NCBI nr
Match:
KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 124 bits (311), Expect = 1.72e-34
Identity = 72/110 (65.45%), Postives = 78/110 (70.91%), Query Frame = 0
Query: 1 MCTRRIA--ASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60
MCTRRIA +SSSFA+LI ILWVSQIWV C QARASRIFPPPPP HT D T
Sbjct: 1 MCTRRIATSSSSSFALLIFILWVSQIWV-CSHCQARASRIFPPPPP-----HTADTTLTG 60
Query: 61 -----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
+AN ELL+KYFK +AF D HR EGF DSKR+IPSCPDPLHN
Sbjct: 61 DQKYNANANAERELLRKYFKGKAF-DRHRRDEGFEDSKRRIPSCPDPLHN 103
BLAST of Csor.00g302770 vs. NCBI nr
Match:
KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 124 bits (311), Expect = 2.38e-34
Identity = 72/110 (65.45%), Postives = 78/110 (70.91%), Query Frame = 0
Query: 1 MCTRRIA--ASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60
MCTRRIA +SSSFA+LI ILWVSQIWV C QARASRIFPPPPP HT D T
Sbjct: 12 MCTRRIATSSSSSFALLIFILWVSQIWV-CSHCQARASRIFPPPPP-----HTADTTLTG 71
Query: 61 -----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
+AN ELL+KYFK +AF D HR EGF DSKR+IPSCPDPLHN
Sbjct: 72 DQKYNANANAERELLRKYFKGKAF-DRHRRDEGFEDSKRRIPSCPDPLHN 114
BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match:
A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)
HSP 1 Score: 134 bits (336), Expect = 1.46e-38
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0
Query: 1 MCTRRIAASSS------FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDK 60
M RRI SSS FAILILILWVSQIWV CC QARASRIFPPPPPPPPP H DK
Sbjct: 1 MFNRRITTSSSSSSTSAFAILILILWVSQIWV-CCHCQARASRIFPPPPPPPPP-HPADK 60
Query: 61 T----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
+ + N + +LLQKYF RAF D HRH EGF DSKRKIPSCPDPLHN
Sbjct: 61 SLSGEEKDNAKNDLLQKYFNGRAF-DRHRHDEGFEDSKRKIPSCPDPLHN 107
BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match:
A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 2.15e-22
Identity = 59/100 (59.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query: 1 MCTRRIAA----SSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTD 60
MCTRRIAA +SSFAILILILWVSQIWV CC QARASRI PPP T D
Sbjct: 1 MCTRRIAAVSSSASSFAILILILWVSQIWV-CCHCQARASRILPPP-------LTGDAKH 60
Query: 61 HANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPD 96
A+ + EL+QKY + RA HEGF DSKR++PSC D
Sbjct: 61 DASGKNELVQKYLRGRAS----DRHEGFEDSKRRVPSCSD 88
BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match:
A0A4S4DK43 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_000229 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 6.56e-13
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 30 FSQARASRIFPPPPPPPPPPHTTDKTDHANRRYELLQKYFKDRAF-LDPHRHHEGFVDSK 89
FS A RI PPPPPPPPP N +L QKYF RA+ L+ + GF DSK
Sbjct: 155 FSTVGAIRIHPPPPPPPPPNGVAIAKQTQN---DLFQKYFHGRAYDLNNNTTQSGFQDSK 214
Query: 90 RKIPSCPDPLHN 100
R++PSCPDPLHN
Sbjct: 215 RRVPSCPDPLHN 223
BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match:
A0A5N6Q3Y4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 4.05e-11
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 15 LILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYELLQKYFKDRAF 74
L+++L V QIWV + S PPPP PPPPP +D A +R EL +K+F R F
Sbjct: 15 LLIMLSVLQIWVLSSDHCSIRSATPPPPPSPPPPPQDSD----AVKRLELHRKFFNGR-F 74
Query: 75 LDPHRHHEGFVDSKRKIPSCPDPLHN 100
D + F ++KR +PSCPDPLHN
Sbjct: 75 PD-----KSFQENKRIVPSCPDPLHN 90
BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match:
A0A072VRB0 (Clavata3/ESR (CLE) gene family member MtCLE03 OS=Medicago truncatula OX=3880 GN=MTR_1g110820 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 4.06e-10
Identity = 38/89 (42.70%), Postives = 43/89 (48.31%), Query Frame = 0
Query: 23 QIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRY--------ELLQKYFKDRAF 82
Q+WV C Q A RIFP D AN + +LL KYFK R F
Sbjct: 24 QMWVCCQSCQVGAIRIFP-------------GNDVANVEFNQDVMHNKDLLNKYFKGRTF 83
Query: 83 LDPHRHHE---GFVDSKRKIPSCPDPLHN 100
+E GF DSKRK+PSCPDPLHN
Sbjct: 84 FGSSNKNETQMGFDDSKRKVPSCPDPLHN 99
BLAST of Csor.00g302770 vs. TAIR 10
Match:
AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )
HSP 1 Score: 47.4 bits (111), Expect = 8.0e-06
Identity = 32/98 (32.65%), Postives = 48/98 (48.98%), Query Frame = 0
Query: 4 RRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYE 63
R +S + +L++IL + +FC +S+ A RIFP P + +
Sbjct: 5 REWRSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETP-----------ASGKRQEED 64
Query: 64 LLQKYFKDRAFLDPHRH-HEGFVDSKRKIPSCPDPLHN 101
L++KYF F +G +SKR +PSCPDPLHN
Sbjct: 65 LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LUA1 | 1.1e-04 | 32.65 | CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P... | [more] |
Match Name | E-value | Identity | Description | |
KAG6573960.1 | 1.61e-70 | 100.00 | CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... | [more] |
KAG7015490.1 | 1.98e-56 | 95.51 | hypothetical protein SDJN02_23126, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KGN52083.1 | 3.01e-38 | 69.09 | hypothetical protein Csa_008231 [Cucumis sativus] | [more] |
KAG7032076.1 | 1.72e-34 | 65.45 | CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar... | [more] |
KAG6601288.1 | 2.38e-34 | 65.45 | CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KR66 | 1.46e-38 | 69.09 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1 | [more] |
A0A6J1DAV9 | 2.15e-22 | 59.00 | uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A4S4DK43 | 6.56e-13 | 52.78 | Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0002... | [more] |
A0A5N6Q3Y4 | 4.05e-11 | 45.35 | Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1 | [more] |
A0A072VRB0 | 4.06e-10 | 42.70 | Clavata3/ESR (CLE) gene family member MtCLE03 OS=Medicago truncatula OX=3880 GN=... | [more] |
Match Name | E-value | Identity | Description | |
AT3G25905.1 | 8.0e-06 | 32.65 | CLAVATA3/ESR-RELATED 27 | [more] |