Csor.00g302770 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g302770
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Clavata3/ESR (CLE) gene family member MtCLE03
Location	Csor_Chr18: 11391167 .. 11391469 (+)
RNA-Seq Expression	Csor.00g302770
Synteny	Csor.00g302770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCCCCACACGACGGACAAAACAGACCACGCCAACCGCCGATACGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

mRNA sequence

ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCCCCACACGACGGACAAAACAGACCACGCCAACCGCCGATACGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCCCCACACGACGGACAAAACAGACCACGCCAACCGCCGATACGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN

Homology

[Close]

BLAST of Csor.00g302770 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 32/98 (32.65%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 4   RRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYE 63
           R   +S +  +L++IL    + +FC +S+  A RIFP  P                +  +
Sbjct: 5   REWRSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETP-----------ASGKRQEED 64

Query: 64  LLQKYFKDRAFLDPHRH-HEGFVDSKRKIPSCPDPLHN 101
           L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 65  LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of Csor.00g302770 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (547), Expect = 1.61e-70
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR 60
           MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR
Sbjct: 1   MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR 60

Query: 61  RYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
           RYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN
Sbjct: 61  RYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of Csor.00g302770 vs. NCBI nr
Match: KAG7015490.1 (hypothetical protein SDJN02_23126, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 1.98e-56
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANR 60
          MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPP HTTDKTDHANR
Sbjct: 1  MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPLHTTDKTDHANR 60

Query: 61 RYELLQKYFKDRAFLDPHRHHEGFVDSKR 89
          RYELLQKYFKDRAFLDPHRHHEGFVD ++
Sbjct: 61 RYELLQKYFKDRAFLDPHRHHEGFVDIRQ 89

[Close]

BLAST of Csor.00g302770 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 3.01e-38
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MCTRRIAASSS------FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDK 60
           M  RRI  SSS      FAILILILWVSQIWV CC  QARASRIFPPPPPPPPP H  DK
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWV-CCHCQARASRIFPPPPPPPPP-HPADK 60

Query: 61  T----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
           +    +  N + +LLQKYF  RAF D HRH EGF DSKRKIPSCPDPLHN
Sbjct: 61  SLSGEEKDNAKNDLLQKYFNGRAF-DRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Csor.00g302770 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (311), Expect = 1.72e-34
Identity = 72/110 (65.45%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MCTRRIA--ASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60
           MCTRRIA  +SSSFA+LI ILWVSQIWV C   QARASRIFPPPPP     HT D T   
Sbjct: 1   MCTRRIATSSSSSFALLIFILWVSQIWV-CSHCQARASRIFPPPPP-----HTADTTLTG 60

Query: 61  -----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
                 +AN   ELL+KYFK +AF D HR  EGF DSKR+IPSCPDPLHN
Sbjct: 61  DQKYNANANAERELLRKYFKGKAF-DRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of Csor.00g302770 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (311), Expect = 2.38e-34
Identity = 72/110 (65.45%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MCTRRIA--ASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60
           MCTRRIA  +SSSFA+LI ILWVSQIWV C   QARASRIFPPPPP     HT D T   
Sbjct: 12  MCTRRIATSSSSSFALLIFILWVSQIWV-CSHCQARASRIFPPPPP-----HTADTTLTG 71

Query: 61  -----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
                 +AN   ELL+KYFK +AF D HR  EGF DSKR+IPSCPDPLHN
Sbjct: 72  DQKYNANANAERELLRKYFKGKAF-DRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.46e-38
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MCTRRIAASSS------FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDK 60
           M  RRI  SSS      FAILILILWVSQIWV CC  QARASRIFPPPPPPPPP H  DK
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWV-CCHCQARASRIFPPPPPPPPP-HPADK 60

Query: 61  T----DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100
           +    +  N + +LLQKYF  RAF D HRH EGF DSKRKIPSCPDPLHN
Sbjct: 61  SLSGEEKDNAKNDLLQKYFNGRAF-DRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.15e-22
Identity = 59/100 (59.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 1  MCTRRIAA----SSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTD 60
          MCTRRIAA    +SSFAILILILWVSQIWV CC  QARASRI PPP        T D   
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWV-CCHCQARASRILPPP-------LTGDAKH 60

Query: 61 HANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPD 96
           A+ + EL+QKY + RA       HEGF DSKR++PSC D
Sbjct: 61 DASGKNELVQKYLRGRAS----DRHEGFEDSKRRVPSCSD 88

[Close]

BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match: A0A4S4DK43 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_000229 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.56e-13
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 30  FSQARASRIFPPPPPPPPPPHTTDKTDHANRRYELLQKYFKDRAF-LDPHRHHEGFVDSK 89
           FS   A RI PPPPPPPPP          N   +L QKYF  RA+ L+ +    GF DSK
Sbjct: 155 FSTVGAIRIHPPPPPPPPPNGVAIAKQTQN---DLFQKYFHGRAYDLNNNTTQSGFQDSK 214

Query: 90  RKIPSCPDPLHN 100
           R++PSCPDPLHN
Sbjct: 215 RRVPSCPDPLHN 223

[Close]

BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match: A0A5N6Q3Y4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.05e-11
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 15  LILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYELLQKYFKDRAF 74
           L+++L V QIWV      +  S   PPPP PPPPP  +D    A +R EL +K+F  R F
Sbjct: 15  LLIMLSVLQIWVLSSDHCSIRSATPPPPPSPPPPPQDSD----AVKRLELHRKFFNGR-F 74

Query: 75  LDPHRHHEGFVDSKRKIPSCPDPLHN 100
            D     + F ++KR +PSCPDPLHN
Sbjct: 75  PD-----KSFQENKRIVPSCPDPLHN 90

[Close]

BLAST of Csor.00g302770 vs. ExPASy TrEMBL
Match: A0A072VRB0 (Clavata3/ESR (CLE) gene family member MtCLE03 OS=Medicago truncatula OX=3880 GN=MTR_1g110820 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.06e-10
Identity = 38/89 (42.70%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 23  QIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRY--------ELLQKYFKDRAF 82
           Q+WV C   Q  A RIFP               D AN  +        +LL KYFK R F
Sbjct: 24  QMWVCCQSCQVGAIRIFP-------------GNDVANVEFNQDVMHNKDLLNKYFKGRTF 83

Query: 83  LDPHRHHE---GFVDSKRKIPSCPDPLHN 100
                 +E   GF DSKRK+PSCPDPLHN
Sbjct: 84  FGSSNKNETQMGFDDSKRKVPSCPDPLHN 99

[Close]

BLAST of Csor.00g302770 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 47.4 bits (111), Expect = 8.0e-06
Identity = 32/98 (32.65%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 4   RRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHANRRYE 63
           R   +S +  +L++IL    + +FC +S+  A RIFP  P                +  +
Sbjct: 5   REWRSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETP-----------ASGKRQEED 64

Query: 64  LLQKYFKDRAFLDPHRH-HEGFVDSKRKIPSCPDPLHN 101
           L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 65  LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Csor.00g302770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUA1	1.1e-04	32.65	CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P...	[more]

BLAST of Csor.00g302770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573960.1	1.61e-70	100.00	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7015490.1	1.98e-56	95.51	hypothetical protein SDJN02_23126, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN52083.1	3.01e-38	69.09	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG7032076.1	1.72e-34	65.45	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	2.38e-34	65.45	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Csor.00g302770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	1.46e-38	69.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	2.15e-22	59.00	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A4S4DK43	6.56e-13	52.78	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0002...	[more]
A0A5N6Q3Y4	4.05e-11	45.35	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1	[more]
A0A072VRB0	4.06e-10	42.70	Clavata3/ESR (CLE) gene family member MtCLE03 OS=Medicago truncatula OX=3880 GN=...	[more]

BLAST of Csor.00g302770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	8.0e-06	32.65	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g302770.m01	Csor.00g302770.m01	mRNA