Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAGCTTAAACACAGCCTCTTCAATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTTGCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTCTACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAACCTCTTCCCGATATTTTCATGAAATTTCTTTGAATCGAGTCATGATCAGTAGCTCGCCGATTTACGATGACGTTCGCTCCTTGTTTTTGGCACCGATAAGTTTTTTGACCTGA
mRNA sequence
ATGCCGAAGCTTAAACACAGCCTCTTCAATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTTGCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTCTACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAACCTCTTCCCGATATTTTCATGAAATTTCTTTGAATCGAGTCATGATCAGTAGCTCGCCGATTTACGATGACGTTCGCTCCTTGTTTTTGGCACCGATAAGTTTTTTGACCTGA
Coding sequence (CDS)
ATGCCGAAGCTTAAACACAGCCTCTTCAATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTTGCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTCTACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAACCTCTTCCCGATATTTTCATGAAATTTCTTTGAATCGAGTCATGATCAGTAGCTCGCCGATTTACGATGACGTTCGCTCCTTGTTTTTGGCACCGATAAGTTTTTTGACCTGA
Protein sequence
MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFRYCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFLT
Homology
BLAST of Csor.00g302380 vs. NCBI nr
Match:
KAG6573921.1 (hypothetical protein SDJN03_27808, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 293 bits (750), Expect = 5.73e-100
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 1 MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFR 60
MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFR
Sbjct: 1 MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFR 60
Query: 61 YCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEIS 120
YCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEIS
Sbjct: 61 YCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEIS 120
Query: 121 LNRVMISSSPIYDDVRSLFLAPISFLT 147
LNRVMISSSPIYDDVRSLFLAPISFLT
Sbjct: 121 LNRVMISSSPIYDDVRSLFLAPISFLT 147
BLAST of Csor.00g302380 vs. NCBI nr
Match:
XP_022945764.1 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Cucurbita moschata])
HSP 1 Score: 146 bits (368), Expect = 2.19e-40
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0
Query: 45 ILALSIQFNHNLLTFRYCFRPIRSAF------SLSLFFDSISCLSTYLPNASNRSRWGTK 104
++A S+ N +T F P +AF SLSL FDSISCLSTYLPNASNRSRWGTK
Sbjct: 32 LIAQSLLSQSNSITI---FSPSDTAFAQSGQPSLSLSFDSISCLSTYLPNASNRSRWGTK 91
Query: 105 ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 146
ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL
Sbjct: 92 ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 136
BLAST of Csor.00g302380 vs. NCBI nr
Match:
XP_022967990.1 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita maxima])
HSP 1 Score: 75.5 bits (184), Expect = 2.64e-13
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 96 GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
GTKI TMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD
Sbjct: 40 GTKIPTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 78
BLAST of Csor.00g302380 vs. NCBI nr
Match:
KAG7032046.1 (putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 53.5 bits (127), Expect = 4.80e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 96 GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
GTKI TMLA RSLTVTSSR ++SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSRSDSKVSLNGVKISNSPLYDD 138
BLAST of Csor.00g302380 vs. NCBI nr
Match:
XP_022983481.1 (putative fasciclin-like arabinogalactan protein 20 [Cucurbita maxima])
HSP 1 Score: 53.5 bits (127), Expect = 4.80e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 96 GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
GTKI TMLA RSLTVTSS+ E+SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSQSDSEVSLNGVKISNSPLYDD 138
BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match:
A0A6J1G1W2 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449908 PE=4 SV=1)
HSP 1 Score: 146 bits (368), Expect = 1.06e-40
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0
Query: 45 ILALSIQFNHNLLTFRYCFRPIRSAF------SLSLFFDSISCLSTYLPNASNRSRWGTK 104
++A S+ N +T F P +AF SLSL FDSISCLSTYLPNASNRSRWGTK
Sbjct: 32 LIAQSLLSQSNSITI---FSPSDTAFAQSGQPSLSLSFDSISCLSTYLPNASNRSRWGTK 91
Query: 105 ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 146
ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL
Sbjct: 92 ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 136
BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match:
A0A6J1HVX4 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111467360 PE=3 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 1.28e-13
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 96 GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
GTKI TMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD
Sbjct: 40 GTKIPTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 78
BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match:
A0A6J1J2F0 (putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111482042 PE=3 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 2.32e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 96 GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
GTKI TMLA RSLTVTSS+ E+SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSQSDSEVSLNGVKISNSPLYDD 138
BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match:
A0A6J1H1S8 (putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111458798 PE=3 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 2.32e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 96 GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
GTKI TMLA RSLTVTSSR ++SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSRSDSKVSLNGVKISNSPLYDD 138
BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match:
A0A6J1DAK1 (putative fasciclin-like arabinogalactan protein 20 OS=Momordica charantia OX=3673 GN=LOC111018700 PE=3 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 4.11e-05
Identity = 48/98 (48.98%), Postives = 55/98 (56.12%), Query Frame = 0
Query: 45 ILALSIQFNHNLLTFRYCFRPIRSAF------SLSLFFDSISCLSTYLPNASNRS-RWGT 104
++A S+ + N LT F P +AF SLSL L YL S +S GT
Sbjct: 47 LIAESLLSHSNSLTI---FSPSDAAFAQSGQPSLSLL--QFHFLPLYLSPESLKSLASGT 106
Query: 105 KISTMLADRSLTVTSS-RYFHEISLNRVMISSSPIYDD 134
KI TML RSLTVTSS R EISLNRV I+SSP YDD
Sbjct: 107 KIPTMLPGRSLTVTSSSRSDSEISLNRVKINSSPFYDD 139
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6573921.1 | 5.73e-100 | 100.00 | hypothetical protein SDJN03_27808, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022945764.1 | 2.19e-40 | 76.85 | LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Cucurbi... | [more] |
XP_022967990.1 | 2.64e-13 | 97.44 | LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20, partial... | [more] |
KAG7032046.1 | 4.80e-05 | 71.79 | putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita argyrospe... | [more] |
XP_022983481.1 | 4.80e-05 | 71.79 | putative fasciclin-like arabinogalactan protein 20 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G1W2 | 1.06e-40 | 76.85 | LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucur... | [more] |
A0A6J1HVX4 | 1.28e-13 | 97.44 | LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucur... | [more] |
A0A6J1J2F0 | 2.32e-05 | 71.79 | putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 G... | [more] |
A0A6J1H1S8 | 2.32e-05 | 71.79 | putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662... | [more] |
A0A6J1DAK1 | 4.11e-05 | 48.98 | putative fasciclin-like arabinogalactan protein 20 OS=Momordica charantia OX=367... | [more] |
Match Name | E-value | Identity | Description | |