Csor.00g297150 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g297150
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 3606750 .. 3607247 (+)
RNA-Seq ExpressionCsor.00g297150
SyntenyCsor.00g297150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCATAATGCCAAAACTCTCCTCTCTTACACATTCCCTTACTTCCGATCCCTCACCATTCCCTTCTCTTCTCCTACTTCTTCTCATCTTCACCCTTCATATTCCCACATGCCGTTTCTTCTCCTATTTCCTTTCTGCCAGCCCTTCTCTGTACTACCATTGTGCTGGCCGTAGTAACTGGCTCTGCAATCCCATGGCAATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATTGCCTTACTCGTGGTGGTGAGTTGGTTGACGGAGAAGGATGCAGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

mRNA sequence

ATGATTCCCATAATGCCAAAACTCTCCTCTCTTACACATTCCCTTACTTCCGATCCCTCACCATTCCCTTCTCTTCTCCTACTTCTTCTCATCTTCACCCTTCATATTCCCACATGCCGTTTCTTCTCCTATTTCCTTTCTGCCAGCCCTTCTCTGTACTACCATTGTGCTGGCCGTAGTAACTGGCTCTGCAATCCCATGGCAATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATTGCCTTACTCGTGGTGGTGAGTTGGTTGACGGAGAAGGATGCAGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

Coding sequence (CDS)

ATGATTCCCATAATGCCAAAACTCTCCTCTCTTACACATTCCCTTACTTCCGATCCCTCACCATTCCCTTCTCTTCTCCTACTTCTTCTCATCTTCACCCTTCATATTCCCACATGCCGTTTCTTCTCCTATTTCCTTTCTGCCAGCCCTTCTCTGTACTACCATTGTGCTGGCCGTAGTAACTGGCTCTGCAATCCCATGGCAATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATTGCCTTACTCGTGGTGGTGAGTTGGTTGACGGAGAAGGATGCAGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

Protein sequence

MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRSNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVSM
Homology
BLAST of Csor.00g297150 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342 bits (878), Expect = 6.71e-119
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60
           MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60

Query: 61  NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120
           NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL
Sbjct: 61  NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120

Query: 121 DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVSM 165
           DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVSM
Sbjct: 121 DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVSM 165

BLAST of Csor.00g297150 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (573), Expect = 1.98e-72
Identity = 113/164 (68.90%), Postives = 130/164 (79.27%), Query Frame = 0

Query: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYF-LSASPSLYYHCAGR 60
           MIP+M K+ S T+ LTSDPSPFPSLLL+LLIFT HIP CRFFSY      P  YY+C G 
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120
              LCNP+  SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR WGS+ CHV TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163
            +   H+ E E IGGCTPWVLVG+I+LLFNMAQRQALIRHCLFV
Sbjct: 121 SE---HKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFV 161

BLAST of Csor.00g297150 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 221 bits (564), Expect = 4.65e-71
Identity = 114/164 (69.51%), Postives = 128/164 (78.05%), Query Frame = 0

Query: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYF-LSASPSLYYHCAGR 60
           MIPIM K+SS TH LTSDPSPFPSLLLLLLIFT HI  CRFFSY      P  YY+C G 
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120
              LCNP+ +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163
            +   H+ E E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 121 SE---HKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 161

BLAST of Csor.00g297150 vs. NCBI nr
Match: XP_027909419.1 (uncharacterized protein LOC114168709 [Vigna unguiculata] >QCD88790.1 hypothetical protein DEO72_LG3g3341 [Vigna unguiculata])

HSP 1 Score: 50.1 bits (118), Expect = 2.40e-04
Identity = 39/149 (26.17%), Postives = 66/149 (44.30%), Query Frame = 0

Query: 7   KLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRSNWLCNP 66
           + SS+    T +P P+P LL+L LIF L      +FSY                      
Sbjct: 7   RTSSVLDGFTLNPLPYPVLLILALIF-LFFAVSWYFSY--------------------EE 66

Query: 67  MAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHE 126
           +  ++ ++    GW L   P+ L+++V WL+  +     + +WGS           R H+
Sbjct: 67  VVETAEEQF---GWVLFATPVVLILIVRWLSSMENSDWFSASWGS---------SRRTHQ 119

Query: 127 TEAEGIGGCTPWVLVGMILLLFNMAQRQA 155
             +EG    +PW +  +IL+L  MA+ Q+
Sbjct: 127 GPSEG---SSPWGVAALILVLLIMARYQS 119

BLAST of Csor.00g297150 vs. NCBI nr
Match: XP_027354652.1 (uncharacterized protein LOC113864767 [Abrus precatorius])

HSP 1 Score: 49.3 bits (116), Expect = 4.83e-04
Identity = 40/157 (25.48%), Postives = 71/157 (45.22%), Query Frame = 0

Query: 7   KLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRSNWLCNP 66
           + SS+    T +P P+P LLLL +IF + +    +FSY                      
Sbjct: 7   RASSVLEGFTLNPLPYPVLLLLAVIF-IFLGISWYFSY--------------------EE 66

Query: 67  MAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHE 126
           +  ++ ++L   GW L   P+ L+++V WL+  + +     +W S     P   + R H+
Sbjct: 67  VVENTEQKL---GWVLFATPVVLIILVRWLSSMENK-----DWFSGS--TPWEGNRRTHQ 126

Query: 127 TEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163
              EG    +PW +  +I++L  + Q Q++  H  FV
Sbjct: 127 NSTEG---SSPWGVAALIVVLLILVQYQSIFLHSWFV 129

BLAST of Csor.00g297150 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 225 bits (573), Expect = 9.61e-73
Identity = 113/164 (68.90%), Postives = 130/164 (79.27%), Query Frame = 0

Query: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYF-LSASPSLYYHCAGR 60
           MIP+M K+ S T+ LTSDPSPFPSLLL+LLIFT HIP CRFFSY      P  YY+C G 
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120
              LCNP+  SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR WGS+ CHV TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163
            +   H+ E E IGGCTPWVLVG+I+LLFNMAQRQALIRHCLFV
Sbjct: 121 SE---HKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFV 161

BLAST of Csor.00g297150 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 1.54e-68
Identity = 110/160 (68.75%), Postives = 124/160 (77.50%), Query Frame = 0

Query: 5   MPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYF-LSASPSLYYHCAGRSNWL 64
           M K+SS TH LTSDPSPFPSLLLLLLIFT HI  CRFFSY      P  YY+C G    L
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMR 124
           CNP+ +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI +  
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISE-- 120

Query: 125 KHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163
            H+ E E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 121 -HKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 157

BLAST of Csor.00g297150 vs. ExPASy TrEMBL
Match: A0A4D6LJT6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g3341 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.16e-04
Identity = 39/149 (26.17%), Postives = 66/149 (44.30%), Query Frame = 0

Query: 7   KLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRSNWLCNP 66
           + SS+    T +P P+P LL+L LIF L      +FSY                      
Sbjct: 7   RTSSVLDGFTLNPLPYPVLLILALIF-LFFAVSWYFSY--------------------EE 66

Query: 67  MAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHE 126
           +  ++ ++    GW L   P+ L+++V WL+  +     + +WGS           R H+
Sbjct: 67  VVETAEEQF---GWVLFATPVVLILIVRWLSSMENSDWFSASWGS---------SRRTHQ 119

Query: 127 TEAEGIGGCTPWVLVGMILLLFNMAQRQA 155
             +EG    +PW +  +IL+L  MA+ Q+
Sbjct: 127 GPSEG---SSPWGVAALILVLLIMARYQS 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573437.16.71e-119100.00hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0043344.11.98e-7268.90hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAE8653331.14.65e-7169.51hypothetical protein Csa_023242 [Cucumis sativus][more]
XP_027909419.12.40e-0426.17uncharacterized protein LOC114168709 [Vigna unguiculata] >QCD88790.1 hypothetica... [more]
XP_027354652.14.83e-0425.48uncharacterized protein LOC113864767 [Abrus precatorius][more]
Match NameE-valueIdentityDescription
A0A5A7TJ529.61e-7368.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LW231.54e-6868.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
A0A4D6LJT61.16e-0426.17Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g3341 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g297150.m01Csor.00g297150.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane