Csor.00g292480 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g292480
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 2151624 .. 2155118 (+)
RNA-Seq Expression	Csor.00g292480
Synteny	Csor.00g292480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACTCTCGTCGCCGAGATTTTCGTCGTCTTCTTGTCTGGTGCTTCTCTTCTCTTCTTCCTGAGGACACAACTTTCATCTGCTTCCCATGTTCATGGATTGTCTGCATTTTACAAGGTCTGTGTTAAGTTATTCTTGTCTGCTTATTGTGTCTTTAACTTGGTTAACCTGCACTTCATTTTCTAGATTTAGAAATTCTTGTGACAATGGGAATAAATGATCTCTCCTTTATTATCATCTCTCTCTTTCTCTCCATTCTTTTGTTTCCTTTATTGGTCTTAGTTTTGATAAAATTAATAGAATTGAGCAGCTGGTGACATGAACTTGACTTTTGAGTCTCCGAGGCTATAATGGTAGAAAAGTGTTTCTTAGGCAAAGGAACTTGCAGAGTGAAGTTGGGTATCACTTAGAATGGTTCCGAGCATATTTCCACTAAGAAAATAAGAGAGTGCTTTACCGAGTGGGAATGCAGAGTACTCAATGTGCAATTTCACAAGGTCGGTCCTCCCATATGGTTGTATCTCATCAAAGAATGATAAGAAGCTGCTTGTTGACATTAGGAAAAAGCGCTATCAGTCTCAATAGAGTCAACCCGTACTAATTAGGTTGTGGTTGGATTGGCTGCAAGCGGAACATAGGCGCTTTAGGTGTGAAATTAGTAATTGTAGTTTCATAAAAGTAGAATTAACAATAATTGGGCAAACAAAAAGGATTTTCGACAAAATGCTCCTACCCCACCATGCCTGTCCCTAAGTGGTACGTGTGTAAGTCTCTTCTAAGTTTTTTAATGTTATTAAAAAAAAAAACATTATAATCTTTACAAAGGTTTAATAAGTTCATTATTTTTTTAGTTTTTTTTAAGTGTATTAAGCCTTCAAATTTAAAAATTAAATTCAAATGCTTCACAAACGTATATTTTAAATAATAATTATTATGAAATAGTTTTAACAATAATTATTATGAATTAGTTTTTAAAGGAATTTATTCCTTCAAATAAATTATGAGTAGAAATTTTGCTGAATGACAGAGATTCTCTGCCTTCGGAAAAGTGGAAGGATGCATTGATTCCTTCGTTGAAATGTTTCCTTCCATCATCTGTCACTTAATCATTATAATATTAATAATAATAATTATTATTATTATATTTTGTAAAATTAAATTCACTGAAATAAATTGAATAAATTAAACAATAATATCATATGCAAAATACAAAATACAAAAGGGATGTAATTATATTTATCAAGTCCTAGAAAAACCAACCATATTTTAAAATTTTAAGGATTATAAAAGTTATTATTTAATTTAACTATCATCCGTATTTTAGTATGATAAATATATTTTACGTACAAACATATTTTAGTATTATTATAGCAAGATATTTGTGAATGTCGCTAATAAATTAATTTGAGTTGACTTTAGCTACCACATAATACTGTTCATTAAATCGTTTTAGGAAGGTATTTATGGGTCCCACAAATCAATTTATGCAGAAAAATAATTATTATTTTAAAGGGTTTTGAAGGCCAACTACTTTGGTTTTTGGGGGACACATAGACTTTTTAATTTTCAGTGTCCTATCTTATCCAAACTACATGGGACACATTTCCAACAATATCATATAAATCAAATCATATTTATTTGCTTATATATATATATATAAATAAATAAAACTATTTAATGTATAAATTATAGCAGTACAAAATCTTATACTCATTATATATTTAAGTATTTAATTAATTTGGATCTTATACTCATTATATATTTATGTATTTAATTAATTTGGTTAGTATAGAAAAATATCTAGTTTGGACGTTTTAATTAAATCTATTTTTTTAAAAAAATTAAACAAATGAAATAGCACCTATTTTATTTGACAACATAAAAATATCTGTCATTACTTTATTGTGAAAGACCTTTTTAATTCAATAATTATAGAGATGAAGATTAAATTATGGATATTTAAAACAATTAGTAATTTATCCACCACCGTGCTAGAACTAGCCAGTTTTCCAGTTCCCAATGAACCAAAAAGAATTTATATTTGTTAATTTAATTTAAAATTTTGGGATTGTGTACAAAAATTTGAATTTTCTGGGATGAGACAAGAGGGGTCTGGCCAATGGCAGGTTCAAACAATAAAGGCGGCCGGTGCAGTGTCTTTTGTTCTTAAATTACGTGTCAACCTTGAACCAAAGCAGCACATAGTTTCCGGTGATCTGTAGGGTCAAGTTATCAAATCTTCAAAACCAATATGAATAATAAAAGGCCAAAAGATGGAAAGCTTTGAAGATTCCCTTGGGGTCAAGACTAACGGAGGCATTGACTGACGGAATCGCACCGTTTGCTAATGCAGTTAGTTTGTTTGCTTGCCGTATGCATCAGGTGAGCGTTAAATCCCCCACCGTCATCCTCTCGGTTTTCGTTAGCTCACGTGTTTGTTCCCAAACCCGACACTTAACGCGCCGTGGTAGTTAGTTATACCCTATTTTCAATTTGGCCCTTCCGTGGTTGCTTCTATCTTACTCCACATCCCCATTATCATCCTACACCAATAAATAAATAAATAAATAAAAAAGAATTATTAAGCCCAAAAAAGAAATAAATAAAAAGAAATATTCTATCGAAATCTGTTTCTATGTCTAGGCTTCCTGTTGCAATAAAAAAGAATATATATTATATAATAAAGTGATCGAGAGATAAAATAATGACTTGAAAATTATTAAAATATTTAATTTAAAAAATTTTATATCAGAATTGTAAGGACGTAACATATTAAACATGCATGATGATCTTCGTGCAAGCAAAAGAAACTATGTACAGCTCCTGATAAGGTACTGAGACATAAGAAGGTGAGAATGGGCAAGAAGAAAATAAGTAATCACCTGATCAAAGAGCTCTGCAAATATATAAAACCCACCATCTTTTTGTTTGGTTTTTCCTTTCAATTCTCCCCTTACAGAGATAAAGGGAGTGAAGGGTTGAAGGAAGATAAGGATTTCTTGGCTTTCCGGTGAGTAGTAACAACTCAGATCTGGCCGACACTGACTCAGTCCTCCGGTAACTATTCGCCTGAAAGTATGGTGATTTTTCAGTTTAATTAATTTAGTAATGGAAGGGAAAGGGAAAATTATTGTGGTTTGTTGGGATTTCTTTTTTTCCTTTCGTCTTGCCCTTCAATTCCAATGATCATTGAAGCTGTGAACTGGACCTTTCTCTCTCTCACTCTTCTTTTTCTCTCTCTACTTTCATTTTCTTTCCCCCATTTTTGAAAGCTGGGTGTTTGCTGCCATGAAAGAGCAGAAGTTTTGTAGAAGGGAGATCTTTAATTCAGATGGGCTCTTAATCGTTAAGTCTAATTTTGTACTGTATTTCAGCTACGATCTGTTTGAGCTGGAACATAAAACTGGCTTTTTGGGTTTCTCGGTGCTAAGAGACACCATGAAATTTCTAAACTTATCGCGTTTTCTCACAGTGAACGAAGAATTACGTTAA

mRNA sequence

ATGAACACTCTCGTCGCCGAGATTTTCGTCGTCTTCTTGTCTGGTGCTTCTCTTCTCTTCTTCCTGAGGACACAACTTTCATCTGCTTCCCATGTTCATGGATTGTCTGCATTTTACAAGGCCAAAAGATGGAAAGCTTTGAAGATTCCCTTGGGGTCAAGACTAACGGAGGCATTGACTGACGGAATCGCACCGTTTGCTAATGCAGTTAGTTTGTTTGCTTGCCGTATGCATCAGATCTGGCCGACACTGACTCAGTCCTCCGTGAACGAAGAATTACGTTAA

Coding sequence (CDS)

ATGAACACTCTCGTCGCCGAGATTTTCGTCGTCTTCTTGTCTGGTGCTTCTCTTCTCTTCTTCCTGAGGACACAACTTTCATCTGCTTCCCATGTTCATGGATTGTCTGCATTTTACAAGGCCAAAAGATGGAAAGCTTTGAAGATTCCCTTGGGGTCAAGACTAACGGAGGCATTGACTGACGGAATCGCACCGTTTGCTAATGCAGTTAGTTTGTTTGCTTGCCGTATGCATCAGATCTGGCCGACACTGACTCAGTCCTCCGTGAACGAAGAATTACGTTAA

Protein sequence

MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYKAKRWKALKIPLGSRLTEALTDGIAPFANAVSLFACRMHQIWPTLTQSSVNEELR

Homology

[Close]

BLAST of Csor.00g292480 vs. NCBI nr
Match: KAG6596539.1 (hypothetical protein SDJN03_09719, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (465), Expect = 3.38e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYKAKRWKALKIPLGSRLTEALT 60
          MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYKAKRWKALKIPLGSRLTEALT
Sbjct: 1  MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYKAKRWKALKIPLGSRLTEALT 60

Query: 61 DGIAPFANAVSLFACRMHQIWPTLTQSSVNEELR 94
          DGIAPFANAVSLFACRMHQIWPTLTQSSVNEELR
Sbjct: 61 DGIAPFANAVSLFACRMHQIWPTLTQSSVNEELR 94

[Close]

BLAST of Csor.00g292480 vs. NCBI nr
Match: KAG7028072.1 (hypothetical protein SDJN02_09252, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 8.27e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYK 40
          MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYK
Sbjct: 1  MNTLVAEIFVVFLSGASLLFFLRTQLSSASHVHGLSAFYK 40

The following BLAST results are available for this feature:

BLAST of Csor.00g292480 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g292480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596539.1	3.38e-58	100.00	hypothetical protein SDJN03_09719, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028072.1	8.27e-16	100.00	hypothetical protein SDJN02_09252, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g292480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g292480 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g292480.m01	Csor.00g292480.m01	mRNA