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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATATGGGCTATACATAAAAAGGAAGCATCTCAAAGGTACGGTCCTATCCCTCTGATATCATTCCCTTCCCATTAAATTTTCAGTTTGGCAGTATTATTTAATTACTTGGGATTCTTTTGTGAATGATATAATGTGATGGGTTTGGGAGGGGGGTGTCCCCTAAGCGGTGGGCAGGGCAGGGCAGGAAGGAAGGAGTAATACTTTGGATTGATATGAGTGGTTGTGGCAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCTTCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAA mRNA sequence ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATATGGGCTATACATAAAAAGGAAGCATCTCAAAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCTTCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAA Coding sequence (CDS) ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATATGGGCTATACATAAAAAGGAAGCATCTCAAAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCTTCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAA Protein sequence MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTSRSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCCYMIYV
Homology
BLAST of Csor.00g283220 vs. NCBI nr
Match: KAG6576618.1 (hypothetical protein SDJN03_24192, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 257 bits (657), Expect = 1.69e-86 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 Query: 1 MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60 MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS Sbjct: 1 MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60
Query: 61 RSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCC 120 RSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCC Sbjct: 61 RSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCC 120
Query: 121 YMIYV 125 YMIYV Sbjct: 121 YMIYV 125
BLAST of Csor.00g283220 vs. NCBI nr
Match: KAG7014670.1 (hypothetical protein SDJN02_22299, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 86.7 bits (213), Expect = 1.79e-19 Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0 Query: 67 WITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGR 108 WITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKG+ Sbjct: 15 WITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGK 56
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6576618.1 | 1.69e-86 | 100.00 | hypothetical protein SDJN03_24192, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7014670.1 | 1.79e-19 | 97.62 | hypothetical protein SDJN02_22299, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 51..74 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 75..89 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 45..105 |
Relationships
The following mRNA feature(s) are a part of this gene:
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