Csor.00g283220 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g283220
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 80443 .. 81014 (+)
RNA-Seq Expression	Csor.00g283220
Synteny	Csor.00g283220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATATGGGCTATACATAAAAAGGAAGCATCTCAAAGGTACGGTCCTATCCCTCTGATATCATTCCCTTCCCATTAAATTTTCAGTTTGGCAGTATTATTTAATTACTTGGGATTCTTTTGTGAATGATATAATGTGATGGGTTTGGGAGGGGGGTGTCCCCTAAGCGGTGGGCAGGGCAGGGCAGGAAGGAAGGAGTAATACTTTGGATTGATATGAGTGGTTGTGGCAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCTTCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAA

mRNA sequence

ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATATGGGCTATACATAAAAAGGAAGCATCTCAAAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCTTCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAA

Coding sequence (CDS)

ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATATGGGCTATACATAAAAAGGAAGCATCTCAAAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCTTCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAA

Protein sequence

MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTSRSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCCYMIYV

Homology

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BLAST of Csor.00g283220 vs. NCBI nr
Match: KAG6576618.1 (hypothetical protein SDJN03_24192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257 bits (657), Expect = 1.69e-86
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60
           MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS
Sbjct: 1   MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60

Query: 61  RSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCC 120
           RSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCC
Sbjct: 61  RSKGRTWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGRTWIIFISPFFCC 120

Query: 121 YMIYV 125
           YMIYV
Sbjct: 121 YMIYV 125

[Close]

BLAST of Csor.00g283220 vs. NCBI nr
Match: KAG7014670.1 (hypothetical protein SDJN02_22299, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.7 bits (213), Expect = 1.79e-19
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 67  WITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGR 108
           WITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKG+
Sbjct: 15  WITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTSRSKGK 56

The following BLAST results are available for this feature:

BLAST of Csor.00g283220 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g283220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576618.1	1.69e-86	100.00	hypothetical protein SDJN03_24192, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014670.1	1.79e-19	97.62	hypothetical protein SDJN02_22299, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g283220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g283220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g283220.m01	Csor.00g283220.m01	mRNA