Csor.00g281220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g281220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRING-type domain-containing protein
LocationCsor_Chr19: 10984662 .. 10985171 (+)
RNA-Seq ExpressionCsor.00g281220
SyntenyCsor.00g281220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTTAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAA

mRNA sequence

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTTAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Coding sequence (CDS)

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTTAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAA

Protein sequence

MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Homology
BLAST of Csor.00g281220 vs. ExPASy Swiss-Prot
Match: O35445 (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04
Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0

Query: 95  MRLFEEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWL---- 154
           M   EE DGG     R+    +  + C +C+E ++ A    CGH +C  C  + WL    
Sbjct: 1   MAAAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQ-WLETRP 60

Query: 155 NRGTCPICNRSI 163
           +R  CP+C   I
Sbjct: 61  DRQECPVCKAGI 71

BLAST of Csor.00g281220 vs. ExPASy Swiss-Prot
Match: Q5M807 (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus OX=10116 GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04
Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0

Query: 95  MRLFEEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWL---- 154
           M   EE DGG     R+    +  + C +C+E ++ A    CGH +C  C  + WL    
Sbjct: 1   MAAAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQ-WLETRP 60

Query: 155 NRGTCPICNRSI 163
           +R  CP+C   I
Sbjct: 61  DRQECPVCKAGI 71

BLAST of Csor.00g281220 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 9.4e-04
Identity = 20/64 (31.25%), Postives = 32/64 (50.00%), Query Frame = 0

Query: 99  EEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC 158
           E  DGG   ++    +   D +C +CM+  K A    CGH+FC +C      N+  CP C
Sbjct: 30  ENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCC 89

Query: 159 NRSI 163
           ++ +
Sbjct: 90  SQHL 93

BLAST of Csor.00g281220 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >KAG6572419.1 hypothetical protein SDJN03_29147, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350 bits (899), Expect = 5.70e-122
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

BLAST of Csor.00g281220 vs. NCBI nr
Match: KAA0061653.1 (zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (824), Expect = 1.56e-110
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N GRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS REDG RS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR+DEGGPTGA DVKSLMRLFEEMDGGDWKTKRKE EN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

BLAST of Csor.00g281220 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_002927 [Cucumis sativus])

HSP 1 Score: 313 bits (801), Expect = 5.02e-107
Identity = 151/169 (89.35%), Postives = 155/169 (91.72%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N  RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS  EDG RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR DEGGPTG  DVKSLMRLFEEMDGGDWKTKRKESEN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

BLAST of Csor.00g281220 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299 bits (765), Expect = 1.22e-100
Identity = 147/170 (86.47%), Postives = 159/170 (93.53%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 122 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 181

Query: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           +CCVCMERSKGAAFIPCGHTFCRVCSRELWLN GTCPIC+RSIIEILDIF
Sbjct: 182 LCCVCMERSKGAAFIPCGHTFCRVCSRELWLNGGTCPICSRSIIEILDIF 229

BLAST of Csor.00g281220 vs. NCBI nr
Match: KAG6589274.1 (hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299 bits (765), Expect = 1.22e-100
Identity = 147/170 (86.47%), Postives = 159/170 (93.53%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 122 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 181

Query: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           +CCVCMERSKGAAFIPCGHTFCRVCSRELWLN GTCPIC+RSIIEILDIF
Sbjct: 182 LCCVCMERSKGAAFIPCGHTFCRVCSRELWLNGGTCPICSRSIIEILDIF 229

BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1)

HSP 1 Score: 350 bits (899), Expect = 2.76e-122
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1)

HSP 1 Score: 350 bits (899), Expect = 2.76e-122
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 7.57e-111
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N GRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS REDG RS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR+DEGGPTGA DVKSLMRLFEEMDGGDWKTKRKE EN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A0A0KEL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 2.43e-107
Identity = 151/169 (89.35%), Postives = 155/169 (91.72%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N  RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS  EDG RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR DEGGPTG  DVKSLMRLFEEMDGGDWKTKRKESEN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A6J1JM70 (RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 3.29e-98
Identity = 144/170 (84.71%), Postives = 157/170 (92.35%), Query Frame = 0

Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGG+WS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGAWSSTSSTLTMIDGIGLSRHGSSRSHRDDGIR 60

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 61  SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 120

Query: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
           +CCVCMERSKGAAFIPCGHTFCRVCSREL L  GTCPIC+RSIIEILDIF
Sbjct: 121 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLKGGTCPICSRSIIEILDIF 168

BLAST of Csor.00g281220 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-33
Identity = 86/177 (48.59%), Postives = 109/177 (61.58%), Query Frame = 0

Query: 8   RRWANLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSG 67
           RR   LK+RLG K +GCCG +W    TS+T    +    +R  S   H         + G
Sbjct: 37  RRKRTLKERLGFKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGSDH----VTGPLNQG 96

Query: 68  VNLAMALAAERNLRTDEGGPTGA-GDVK-SLMRLFEE------MDGGDWKTKRKESENT- 127
           +NLA ALAAERN RT+E   +G+   +K SLMRL EE      ++  + +     + +T 
Sbjct: 97  MNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEENETERVTASASSTV 156

Query: 128 ----GDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
                D +CCVCM R KGAAFIPCGHTFCRVCSRE+WLNRG+CP+CNR IIEILDI+
Sbjct: 157 RGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209

BLAST of Csor.00g281220 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30
Identity = 93/201 (46.27%), Postives = 105/201 (52.24%), Query Frame = 0

Query: 1   MERQNGG----RRWANLKQRLGLKGMGCCGGSW-----------SPTS-----STLTMIE 60
           + RQ  G    RR   LK+RL  K +GCCG +W           SPTS       L +  
Sbjct: 27  LRRQMSGHDLTRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIET 86

Query: 61  GLSL-SRHGSSRSHREDGARSSASSGVNLAMALAAERNLR--TDEGGPTGAGDVKSLMRL 120
           GL L S HGS              +G+NLA AL AER  R  + E          SLMRL
Sbjct: 87  GLVLESDHGS-------------GTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRL 146

Query: 121 FEEMDGGDWKTKRKESE---------NTGDWMCCVCMERSKGAAFIPCGHTFCRVCSREL 170
            EE          KE+E            D +CCVCM R KGAAFIPCGHTFCRVCSREL
Sbjct: 147 LEETAEKIVDDDGKETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREL 206

BLAST of Csor.00g281220 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-27
Identity = 76/182 (41.76%), Postives = 92/182 (50.55%), Query Frame = 0

Query: 5   NGGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 64
           NGG R    W  LKQRL    +GCCG    P +  L   E   +          ++    
Sbjct: 32  NGGDRTMSKWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIVVDDDDDEEESQNQVVD 91

Query: 65  SASSGV-------------NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWK 124
            +  G              NLA ALA ER     E     A     LMRL  E DG D  
Sbjct: 92  FSDPGTGTELDCLTRGSTRNLAEALAEERLAHVTE--EETAVTKVPLMRLLAESDGCDST 151

Query: 125 TKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILD 170
           T    +    D +CCVCM R KGAAFIPCGHT+CRVCSRE+W+NRGTCP+CNRSI ++LD
Sbjct: 152 T----TWLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLD 204

BLAST of Csor.00g281220 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 70/175 (40.00%), Postives = 91/175 (52.00%), Query Frame = 0

Query: 10  WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHG----SSRSHREDGARSSASSG 69
           W +L+++L LK  G    S +   S  T I       H      S S       SS    
Sbjct: 76  WKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSVEGR 135

Query: 70  VNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDGG------DWKTKRKESEN 129
           + L   LA ER L   E       +V+    SLM L EE +G       D + + + +  
Sbjct: 136 IRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQMSFVSVDGEAEEEVAAV 195

Query: 130 T-GDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
           T  +  CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP+CN +I+E+LD+F
Sbjct: 196 TAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

BLAST of Csor.00g281220 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 70/175 (40.00%), Postives = 91/175 (52.00%), Query Frame = 0

Query: 10  WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHG----SSRSHREDGARSSASSG 69
           W +L+++L LK  G    S +   S  T I       H      S S       SS    
Sbjct: 76  WKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSVEGR 135

Query: 70  VNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDGG------DWKTKRKESEN 129
           + L   LA ER L   E       +V+    SLM L EE +G       D + + + +  
Sbjct: 136 IRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQMSFVSVDGEAEEEVAAV 195

Query: 130 T-GDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
           T  +  CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP+CN +I+E+LD+F
Sbjct: 196 TAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O354457.2e-0431.94E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1[more]
Q5M8077.2e-0431.94E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus OX=10116 GN=Rnf5 PE=2 SV=1[more]
P432549.4e-0431.25E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV... [more]
Match NameE-valueIdentityDescription
XP_022953088.15.70e-122100.00RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding ... [more]
KAA0061653.11.56e-11091.72zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C... [more]
KGN47968.15.02e-10789.35hypothetical protein Csa_002927 [Cucumis sativus][more]
XP_023531397.11.22e-10086.47uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.... [more]
KAG6589274.11.22e-10086.47hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1HXI82.76e-122100.00RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 ... [more]
A0A6J1GME52.76e-122100.00RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=... [more]
A0A5A7V0I37.57e-11191.72Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KEL62.43e-10789.35RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 P... [more]
A0A6J1JM703.29e-9884.71RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT4G03965.14.5e-3348.59RING/U-box superfamily protein [more]
AT4G22250.12.1e-3046.27RING/U-box superfamily protein [more]
AT1G62370.16.2e-2741.76RING/U-box superfamily protein [more]
AT3G25030.13.2e-2340.00RING/U-box superfamily protein [more]
AT3G25030.23.2e-2340.00RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..158
e-value: 4.9E-7
score: 39.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 121..159
score: 11.353297
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 99..169
e-value: 1.7E-14
score: 55.0
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 120..164
e-value: 1.2E-12
score: 47.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..64
NoneNo IPR availablePANTHERPTHR46629OS01G0917900 PROTEINcoord: 1..169
NoneNo IPR availablePANTHERPTHR46629:SF18LIGASE, PUTATIVE-RELATEDcoord: 1..169
NoneNo IPR availableCDDcd16449RING-HCcoord: 121..158
e-value: 1.08995E-8
score: 46.6917
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 112..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g281220.m01Csor.00g281220.m01mRNA