Csor.00g281220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTTAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAA ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTTAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAA ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTTAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAA MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF Homology
BLAST of Csor.00g281220 vs. ExPASy Swiss-Prot
Match: O35445 (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04 Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy Swiss-Prot
Match: Q5M807 (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus OX=10116 GN=Rnf5 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04 Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2) HSP 1 Score: 45.1 bits (105), Expect = 9.4e-04 Identity = 20/64 (31.25%), Postives = 32/64 (50.00%), Query Frame = 0
BLAST of Csor.00g281220 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >KAG6572419.1 hypothetical protein SDJN03_29147, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 350 bits (899), Expect = 5.70e-122 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of Csor.00g281220 vs. NCBI nr
Match: KAA0061653.1 (zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 322 bits (824), Expect = 1.56e-110 Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0
BLAST of Csor.00g281220 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_002927 [Cucumis sativus]) HSP 1 Score: 313 bits (801), Expect = 5.02e-107 Identity = 151/169 (89.35%), Postives = 155/169 (91.72%), Query Frame = 0
BLAST of Csor.00g281220 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 299 bits (765), Expect = 1.22e-100 Identity = 147/170 (86.47%), Postives = 159/170 (93.53%), Query Frame = 0
BLAST of Csor.00g281220 vs. NCBI nr
Match: KAG6589274.1 (hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 299 bits (765), Expect = 1.22e-100 Identity = 147/170 (86.47%), Postives = 159/170 (93.53%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1) HSP 1 Score: 350 bits (899), Expect = 2.76e-122 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1) HSP 1 Score: 350 bits (899), Expect = 2.76e-122 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1) HSP 1 Score: 322 bits (824), Expect = 7.57e-111 Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A0A0KEL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1) HSP 1 Score: 313 bits (801), Expect = 2.43e-107 Identity = 151/169 (89.35%), Postives = 155/169 (91.72%), Query Frame = 0
BLAST of Csor.00g281220 vs. ExPASy TrEMBL
Match: A0A6J1JM70 (RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV=1) HSP 1 Score: 290 bits (741), Expect = 3.29e-98 Identity = 144/170 (84.71%), Postives = 157/170 (92.35%), Query Frame = 0
BLAST of Csor.00g281220 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein ) HSP 1 Score: 138.7 bits (348), Expect = 4.5e-33 Identity = 86/177 (48.59%), Postives = 109/177 (61.58%), Query Frame = 0
BLAST of Csor.00g281220 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein ) HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30 Identity = 93/201 (46.27%), Postives = 105/201 (52.24%), Query Frame = 0
BLAST of Csor.00g281220 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein ) HSP 1 Score: 118.2 bits (295), Expect = 6.2e-27 Identity = 76/182 (41.76%), Postives = 92/182 (50.55%), Query Frame = 0
BLAST of Csor.00g281220 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein ) HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23 Identity = 70/175 (40.00%), Postives = 91/175 (52.00%), Query Frame = 0
BLAST of Csor.00g281220 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein ) HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23 Identity = 70/175 (40.00%), Postives = 91/175 (52.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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