Csor.00g276970 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g276970
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	type IV secretion system protein virB10-like
Location	Csor_Chr19: 8733977 .. 8734363 (+)
RNA-Seq Expression	Csor.00g276970
Synteny	Csor.00g276970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGACCGCTCATTCCGGCTACGGCTCCGTCGGTCCAGTCATCGCCGTCCTCGCAGTCATTTCCATCCTCGGCGTCATCGCCGGCATTATCGGCCGTCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAGGAATGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGCTCCCTCGACCCTCCTCCGCCGCCGCCGCCGCATCTCCGCCACCCTCCGCCGCTCGATGCCGTTCCTGTAGTCGAACCCCTTGGTGGGCCGCCGGAAATCAAGCAAGGCGCCGATGACAAACGCGAGAATTTGCAGTCGGCGGCTCCCGGAACCGGCGGTGAGTCGTGA

Protein sequence

MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSAAPGTGGES

Homology

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BLAST of Csor.00g276970 vs. NCBI nr
Match: KAG6571994.1 (hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259 bits (661), Expect = 5.18e-87
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120
           EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120

Query: 121 APGTGGES 128
           APGTGGES
Sbjct: 121 APGTGGES 128

[Close]

BLAST of Csor.00g276970 vs. NCBI nr
Match: XP_022952791.1 (uncharacterized protein LOC111455383 [Cucurbita moschata])

HSP 1 Score: 256 bits (654), Expect = 7.66e-86
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120
           EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120

Query: 121 APGTGG 126
           APGTGG
Sbjct: 121 APGTGG 126

[Close]

BLAST of Csor.00g276970 vs. NCBI nr
Match: KAG7011671.1 (hypothetical protein SDJN02_26577, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252 bits (643), Expect = 3.09e-84
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTPVDQLQPPPTAHSG+GSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPP--HLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQ 120
           EWVEKKCASCLDGSLDPPPPPPP  HLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQ
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQ 120

Query: 121 SAAPGTGGES 128
           SAAPGTGGES
Sbjct: 121 SAAPGTGGES 130

[Close]

BLAST of Csor.00g276970 vs. NCBI nr
Match: XP_022972364.1 (uncharacterized protein LOC111470940 [Cucurbita maxima])

HSP 1 Score: 241 bits (615), Expect = 6.58e-80
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP DQLQPPPTAHSG+GSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPFDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120
           EWVEKKCASCLDGSLDPPPPP  HLRHPPPLDAVPVVEPLGGPPEIKQGAD+KRENLQSA
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPA-HLRHPPPLDAVPVVEPLGGPPEIKQGADEKRENLQSA 120

Query: 121 APGTGG 126
           APGTGG
Sbjct: 121 APGTGG 125

[Close]

BLAST of Csor.00g276970 vs. NCBI nr
Match: XP_008455516.1 (PREDICTED: type IV secretion system protein virB10-like [Cucumis melo] >KAA0031279.1 type IV secretion system protein virB10-like [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (562), Expect = 7.94e-72
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPP---HLRHPPPLDAVPVVEPLGGPP-EIKQGADD--KR 120
           +WVEKKCASCLDGSLDPPPPPPP   HLRHPPPLD+VPV EPLGGPP EIKQGAD   K 
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADADAKG 120

Query: 121 ENLQSAAPGTGGES 128
           ENLQSAAPGTGGES
Sbjct: 121 ENLQSAAPGTGGES 134

[Close]

BLAST of Csor.00g276970 vs. ExPASy TrEMBL
Match: A0A6J1GL66 (uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC111455383 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 3.71e-86
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120
           EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120

Query: 121 APGTGG 126
           APGTGG
Sbjct: 121 APGTGG 126

[Close]

BLAST of Csor.00g276970 vs. ExPASy TrEMBL
Match: A0A6J1IBA8 (uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 3.19e-80
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP DQLQPPPTAHSG+GSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPFDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQGADDKRENLQSA 120
           EWVEKKCASCLDGSLDPPPPP  HLRHPPPLDAVPVVEPLGGPPEIKQGAD+KRENLQSA
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPA-HLRHPPPLDAVPVVEPLGGPPEIKQGADEKRENLQSA 120

Query: 121 APGTGG 126
           APGTGG
Sbjct: 121 APGTGG 125

[Close]

BLAST of Csor.00g276970 vs. ExPASy TrEMBL
Match: A0A5A7SPN0 (Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00320 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 3.84e-72
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPP---HLRHPPPLDAVPVVEPLGGPP-EIKQGADD--KR 120
           +WVEKKCASCLDGSLDPPPPPPP   HLRHPPPLD+VPV EPLGGPP EIKQGAD   K 
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADADAKG 120

Query: 121 ENLQSAAPGTGGES 128
           ENLQSAAPGTGGES
Sbjct: 121 ENLQSAAPGTGGES 134

[Close]

BLAST of Csor.00g276970 vs. ExPASy TrEMBL
Match: A0A1S3C1T9 (type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC103495668 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 3.84e-72
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPP---HLRHPPPLDAVPVVEPLGGPP-EIKQGADD--KR 120
           +WVEKKCASCLDGSLDPPPPPPP   HLRHPPPLD+VPV EPLGGPP EIKQGAD   K 
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADADAKG 120

Query: 121 ENLQSAAPGTGGES 128
           ENLQSAAPGTGGES
Sbjct: 121 ENLQSAAPGTGGES 134

[Close]

BLAST of Csor.00g276970 vs. ExPASy TrEMBL
Match: A0A0A0K6N4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 4.90e-70
Identity = 112/133 (84.21%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPP-EIKQGA----DDKRE 120
           +WVEKKCASCLDGSLDPPPPPP HLRHPPPLD+VPV EPLGGPP EIKQ A    D K E
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPP-HLRHPPPLDSVPVAEPLGGPPPEIKQSAHADADAKGE 120

Query: 121 NLQSAAPGTGGES 128
           NLQSAAPGTGGES
Sbjct: 121 NLQSAAPGTGGES 132

[Close]

BLAST of Csor.00g276970 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 7.8e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 9  QPPP----------TAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYD 68
          QPPP           + +G  ++GP IAV  V+++L V+A +IGRLCSG+ + GYG  YD
Sbjct: 9  QPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYG-DYD 68

Query: 69 VEEWVEKKCASCLDGSLDPPPPPPPHLRHPPP 91
          +E W E +C SC+DG + P  P P     PPP
Sbjct: 69 MERWAESRCGSCIDGHIHPHRPSPSPT--PPP 97

[Close]

BLAST of Csor.00g276970 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 9   QPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVEEWVEKKCA 68
           Q  P+ +S + S+  ++ VLAVI+IL V+AG+  RLC GR +  +G  +D+E WVE+KC 
Sbjct: 26  QDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-SHGGDHDIEGWVERKCR 85

Query: 69  SCLDGSL-------DPPPPPPP 84
           SC+D  +        PPPPPPP
Sbjct: 86  SCIDAGIPAVSAAPSPPPPPPP 106

The following BLAST results are available for this feature:

BLAST of Csor.00g276970 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g276970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571994.1	5.18e-87	100.00	hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952791.1	7.66e-86	100.00	uncharacterized protein LOC111455383 [Cucurbita moschata]	[more]
KAG7011671.1	3.09e-84	97.69	hypothetical protein SDJN02_26577, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022972364.1	6.58e-80	96.03	uncharacterized protein LOC111470940 [Cucurbita maxima]	[more]
XP_008455516.1	7.94e-72	85.82	PREDICTED: type IV secretion system protein virB10-like [Cucumis melo] >KAA00312...	[more]

BLAST of Csor.00g276970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL66	3.71e-86	100.00	uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC1114553...	[more]
A0A6J1IBA8	3.19e-80	96.03	uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940...	[more]
A0A5A7SPN0	3.84e-72	85.82	Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C1T9	3.84e-72	85.82	type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0K6N4	4.90e-70	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1	[more]

BLAST of Csor.00g276970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	7.8e-14	43.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	1.3e-13	45.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..128
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 12..83
None	No IPR available	PANTHER	PTHR33429:SF2	OS01G0888850 PROTEIN	coord: 12..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g276970.m01	Csor.00g276970.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane