Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAACAGTACCTGGAAAGAATGTTTCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCGGAACCAGAATCAGCTCTCTCTTCAAAACGACCATCTGGAAAGCTCAATAGCAAAAACCTCAATCTGGTGGAAGGGAAAGAATTTGATGCAGATGAGAAATATAGATCTGAGCTGATTTCAATTTCCTTCCTCGAGTCGCCACCCGAAATTGGAAGTGTACCCGTCGGCAAACTCAAAGGTTAGCACCTGGACGTTCGTTATCGTAATTGTATACACTCTTATGTAGAAATGATGCTAATCTAAGTGTGTTGTTGCAACCATGGAGCAATGGTGTCCATGTTCTTTGGTTCTGTAACTTAGACCCTCCCACTGGTTGTCTGTACTATCTTTATCTTTTGAAAACTTATTGCCGTGTGAGCCCCAATGAATGAACTTATGAACCCTCGCTACTTAGCTTTATTATTTTACATTTTTGTCACACTCCTAATGTAATATCATAATATGGTGCCTTAAAGATTGTATATACCTTATACATTGTATCTTATAATAGCTTGTATATGAATCTTAGGGATATATATACACACACATATATATATAGTGAGATTTGACATTTAATCTTCAAATTATGTTCAAATTTGCTATTTTATAACATATTTGTTATAGAAATTTTTAGAATTGTCCTTGGGGGAGCCTTATCTATGATTCTTTACGTTTTATATATATATAGATACATATATATACACACACACATATATATATATACATATAATGCAAGGATGGAGAGATAAGACTCAAACTTTCGAACTTTAAGAAAAATAGTAGCTTATCGAACTTTTTAGAGTCGTATATAATATGTGTATGTATTTATATATATATTTAGAGATTTTAACACAATTACAACTTTCGAACTTTAAGAAAAATAGTAGTTTATCGAACTTTTCAGAGTCTATATAATATGTGTATGTATTTATATATATATCTAGAGATTTTAACACAATTACGTAGATTACTTATTATCTCGAACTATTTATTTATTTATTATTGTCAAGAGCTTAACAGAATCAAATTTTATGACTTTGGAAAAGAAATATTTATACCATATTCAAATGACGGTAAAAGTATGAGAATAAAAAAAAAATTAAAATATTATTTTGATATTTGTACTTTTAGTTTATTGTTATTTTATTTTATTTTTTAAAATATTTGGTCTCTTGACCTCACTCTTATAAAATTTTAAAATACGTAGAAGACCCCATAATATTTATTTTATTTATTAAGGTGGATAAAAAATAACTTATTTATTAAAAGTTTAAGGACTAAATTTAAACCTTTAAAAATATAAATATTCGTCATAAAAATGGAAAATATTATCTAACGTTGTAACTGAAGAAATATTTTTCTAAATTTTAATATAAAAAATTAAACCTTATTTAAAAAAGAAAAAGTGATAAAAAGATTAGAAAAAGTCCTAACAATATTAGAATTAGAAATATCGTTTTATCTTGTCCAATGGATGCGCCGCGAAGATATTTAGACAAGCATCAGTGGCGCCCCTCGGCGGGCTCTCAAATTTATCATGAAATTGGCTGTAGACGATCTTTTCCACCGACCTGCACGATACTATATAGTTCTCCGAATCATCAAGTCGATTTGAAGTTTTGGAGCTAAAATGGCCGCAGGAAACTTGATGAGAAGAACCGAGAAGAATGGCTACGGCTGTCGGAAACCGAACGTCCGGCGGATGGTACGTTCCTCAAATGGTGGCCGCCTCTTGTGCCGTCGTCGAATGAATTCCACTGGTTGATTTTGTTCTTGAGGTTAGAGATGCTATGATATGCTAGCTTCTACTATTGTTTATTCGCTCTCATTGCATGTTTTTTAATTTCGTATCGGCATCTCCAAGTGTTCATTGAAATGTCAGCTTACGATGAGTTCATTTCCTGTTAGCTTCTTTTTCCAATCTATTTGGAATCATAGAATTGTTTATTCTTTTTTGTGTGGGTTTGATTCGGAAGAATGAAGTTGTATTGAAACTGATGGATTACGTTTATTATTATGGAGGGAACGAATCACTTAAAATGTTTGTTTATTCCTCTACGTGTTATTGCTTTGTTTTGTTTTCTTCAGATTCGGATGTCATCTGAATATGAATCATGAAAAATTATTCACCATTAACGAAACGAATCTTGTATTAAACAAGACGGACCTAGCGGATCGGTCACAGACATAGGTTCGTAATTTCTGTAACTTCCATGTTTTTCGTTCATTTTAGCTTAGTTTTTACTGCTGGAGTTCCTTTCAAGTCATTCTGGATTTCGTAGGTTATCAATGTAGCTAATTTGATTTGTCATTGAAGTCTGGTTGAACATAATAATGACAATTCTATGGGATATTTGTGGGGAGAACATGAGATGATGCAAATGAAATACCAGTGGGACGTAATTTACTCTCTTCCCTTGTTATGATCAATGATACAGGGGTTTTTTAATTTTCGATTGTTTATGATTTTCACATGACTGTTACTTCAATTTTTTCCCCTTTTGGTTTAAGTTGGTTCCCCGGTCTCCTTATGTGACCTTCCAGTTATCTTTAGATACAAATATATATTTGTTACTTCTCAAAATAGAATTGCAGTATATGAAGCAGGATTAGTACTTAGCGATCATTTAACATTAATTCTTCAGTAGATGTACCATTTTTTGAGGTCGTTTATTCTTGTACAGTTTGAATCATATTCAAATCGATTCATTAGTTCAATGTTTCACATGTTTATACTTCACTCTATTAATAGGACTGGACAAGATATTTTGAAGACCATGCATCTGTTATGGCGTTAGGAGAATATTAGGGAGGTAAAGAGCTAAAATGTAATCTTTTTGTGTTCATTTTTAATTGCTATCTTGTTTGAGCAACATATTTTCCTTTTACTTTCCAGCTTTGAAATGCTGTTGATGGTAATTGTCAGATGTCTTGGCAGTGTATGCACTTTTTTTTTCTCTAACCATGTTTTGTGCAAAATTAAGTGCCAACTAATTGTAATTTACACATCCCATATTCAAAATGATACTTTGTCACGGTGGGACAATCCATTATTTGTTCGATCCTTTGAGCTGGCCTTAGTTGATCTCTTCTTGGTCTAATAGCAATTGGTGATGGTTCACTTCATACAGTTCTTGAACATTCTTCAAGCTAGAGTTAGAGAATTGAAGAAGAGCGGTCATTCTAGTCATGCCACAACAATGGTGCTGCTTCGAAATCCAAATGTCACTAAGTTGGCCCTTGCAACTCTCTGCATCATATTGGGAGAATTAGTGCTGTAA
mRNA sequence
ATGGATATAACAGTACCTGGAAAGAATGTTTCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCGGAACCAGAATCAGCTCTCTCTTCAAAACGACCATCTGGAAAGCTCAATAGCAAAAACCTCAATCTGGTGGAAGGGAAAGAATTTGATGCAGATGAGAAATATAGATCTGAGCTGATTTCAATTTCCTTCCTCGAGTCGCCACCCGAAATTGGAAGTGTACCCGTCGGCAAACTCAAAGGAAACTTGATGAGAAGAACCGAGAAGAATGGCTACGGCTGTCGGAAACCGAACGTCCGGCGGATGGAGAATATTAGGGAGTTCTTGAACATTCTTCAAGCTAGAGTTAGAGAATTGAAGAAGAGCGGTCATTCTAGTCATGCCACAACAATGGTGCTGCTTCGAAATCCAAATGTCACTAAGTTGGCCCTTGCAACTCTCTGCATCATATTGGGAGAATTAGTGCTGTAA
Coding sequence (CDS)
ATGGATATAACAGTACCTGGAAAGAATGTTTCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCGGAACCAGAATCAGCTCTCTCTTCAAAACGACCATCTGGAAAGCTCAATAGCAAAAACCTCAATCTGGTGGAAGGGAAAGAATTTGATGCAGATGAGAAATATAGATCTGAGCTGATTTCAATTTCCTTCCTCGAGTCGCCACCCGAAATTGGAAGTGTACCCGTCGGCAAACTCAAAGGAAACTTGATGAGAAGAACCGAGAAGAATGGCTACGGCTGTCGGAAACCGAACGTCCGGCGGATGGAGAATATTAGGGAGTTCTTGAACATTCTTCAAGCTAGAGTTAGAGAATTGAAGAAGAGCGGTCATTCTAGTCATGCCACAACAATGGTGCTGCTTCGAAATCCAAATGTCACTAAGTTGGCCCTTGCAACTCTCTGCATCATATTGGGAGAATTAGTGCTGTAA
Protein sequence
MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYRSELISISFLESPPEIGSVPVGKLKGNLMRRTEKNGYGCRKPNVRRMENIREFLNILQARVRELKKSGHSSHATTMVLLRNPNVTKLALATLCIILGELVL
Homology
BLAST of Csor.00g255040 vs. ExPASy Swiss-Prot
Match:
O82497 (DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DGP2 PE=3 SV=1)
HSP 1 Score: 49.7 bits (117), Expect = 3.6e-05
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0
Query: 92 EKNGYGCRKPNVRRMENIREFLNILQARVRELKKSGHSSHATTMVLLRNPNVTKLALATL 151
E+ Y N + +++ LN LQ++VREL K+GHS H TTM+LL PNV K AL+
Sbjct: 100 EERNYLSYAVNSHNKDCVKQLLNFLQSQVRELHKAGHSGHTTTMMLLGIPNVGKSALSNS 159
Query: 152 CIILGEL 159
+G +
Sbjct: 160 LHHIGRI 166
BLAST of Csor.00g255040 vs. NCBI nr
Match:
KAG6597232.1 (DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 305 bits (782), Expect = 2.01e-104
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR
Sbjct: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
Query: 61 SELISISFLESPPEIGSVPVGKLKGNLMRRTEKNGYGCRKPNVRRMENIREFLNILQARV 120
SELISISFLESPPEIGSVPVGKLKGNLMRRTEKNGYGCRKPNVRRMENIREFLNILQARV
Sbjct: 61 SELISISFLESPPEIGSVPVGKLKGNLMRRTEKNGYGCRKPNVRRMENIREFLNILQARV 120
Query: 121 RELKKSGHSSHATTMVLLRNPNVTKLALATLCIILGELVL 160
RELKKSGHSSHATTMVLLRNPNVTKLALATLCIILGELVL
Sbjct: 121 RELKKSGHSSHATTMVLLRNPNVTKLALATLCIILGELVL 160
BLAST of Csor.00g255040 vs. NCBI nr
Match:
XP_022963288.1 (uncharacterized protein LOC111463263 [Cucurbita moschata])
HSP 1 Score: 163 bits (413), Expect = 6.19e-49
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 84
Query: 61 SELISISFLESPPEIGSVPVGKLKG 85
SELISISFLESPPEIGSVPVGKLKG
Sbjct: 85 SELISISFLESPPEIGSVPVGKLKG 109
BLAST of Csor.00g255040 vs. NCBI nr
Match:
XP_022974968.1 (uncharacterized protein LOC111473815 [Cucurbita maxima])
HSP 1 Score: 162 bits (410), Expect = 1.77e-48
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 84
Query: 61 SELISISFLESPPEIGSVPVGKLKG 85
SELI+ISFLESPPEIGSVPVGKLKG
Sbjct: 85 SELIAISFLESPPEIGSVPVGKLKG 109
BLAST of Csor.00g255040 vs. NCBI nr
Match:
KAG7028703.1 (DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 133 bits (334), Expect = 2.22e-37
Identity = 71/76 (93.42%), Postives = 71/76 (93.42%), Query Frame = 0
Query: 85 GNLMRRTEKNGYGCRKPNVRRMENIREFLNILQARVRELKKSGHSSHATTMVLLRNPNVT 144
GNLMRRTEKNGYGCRKPNVRRM FLNILQARVRELKKSGHSSHATTMVLLRNPNVT
Sbjct: 4 GNLMRRTEKNGYGCRKPNVRRM-----FLNILQARVRELKKSGHSSHATTMVLLRNPNVT 63
Query: 145 KLALATLCIILGELVL 160
KLALATLCIILGELVL
Sbjct: 64 KLALATLCIILGELVL 74
BLAST of Csor.00g255040 vs. NCBI nr
Match:
KAA0049081.1 (hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK17482.1 hypothetical protein E5676_scaffold434G003470 [Cucumis melo var. makuwa])
HSP 1 Score: 117 bits (293), Expect = 5.73e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNL--------VEGKE 60
MDITVPG+N EEVTRESLI+ISY EPE+ LSSKRPS KL+S+N+NL VEGKE
Sbjct: 1 MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60
Query: 61 FDADEKYRSELISISFLESPPEIGSVPV 80
+D DEK+RSELI+ISFLES PE GSVPV
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPV 88
BLAST of Csor.00g255040 vs. ExPASy TrEMBL
Match:
A0A6J1HHB9 (uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC111463263 PE=4 SV=1)
HSP 1 Score: 163 bits (413), Expect = 2.99e-49
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 84
Query: 61 SELISISFLESPPEIGSVPVGKLKG 85
SELISISFLESPPEIGSVPVGKLKG
Sbjct: 85 SELISISFLESPPEIGSVPVGKLKG 109
BLAST of Csor.00g255040 vs. ExPASy TrEMBL
Match:
A0A6J1IHW2 (uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815 PE=4 SV=1)
HSP 1 Score: 162 bits (410), Expect = 8.56e-49
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR
Sbjct: 25 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 84
Query: 61 SELISISFLESPPEIGSVPVGKLKG 85
SELI+ISFLESPPEIGSVPVGKLKG
Sbjct: 85 SELIAISFLESPPEIGSVPVGKLKG 109
BLAST of Csor.00g255040 vs. ExPASy TrEMBL
Match:
A0A5A7U641 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003470 PE=4 SV=1)
HSP 1 Score: 117 bits (293), Expect = 2.78e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNL--------VEGKE 60
MDITVPG+N EEVTRESLI+ISY EPE+ LSSKRPS KL+S+N+NL VEGKE
Sbjct: 1 MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60
Query: 61 FDADEKYRSELISISFLESPPEIGSVPV 80
+D DEK+RSELI+ISFLES PE GSVPV
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPV 88
BLAST of Csor.00g255040 vs. ExPASy TrEMBL
Match:
A0A0A0L967 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1)
HSP 1 Score: 114 bits (286), Expect = 3.59e-30
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNL--------VEGKE 60
MD TVPG+N EEVTRESLI+ISY EPE+ LSS +PS K++ +N+NL +EGKE
Sbjct: 1 MDTTVPGRNAPEEVTRESLISISYEEPETVLSSNQPSEKISRENINLANGINHNQMEGKE 60
Query: 61 FDADEKYRSELISISFLESPPEIGSVPVGKLKG 85
+D DEK+RSELI+ISFLES PE GSVPV +LKG
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPVAELKG 93
BLAST of Csor.00g255040 vs. ExPASy TrEMBL
Match:
A0A803NHX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 4.57e-18
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 0
Query: 1 MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60
MD T GK VSEEVTRESLI+ISYS PE L+SKR K+N ++L VE +FD ++K R
Sbjct: 1 MDKTALGKEVSEEVTRESLISISYSLPEKVLTSKRSVDKVNGESL--VERVDFDGEDKCR 60
Query: 61 SELISISFLESPPEIGSVPVGKLK 84
SELISIS+ +SP ++G +P G LK
Sbjct: 61 SELISISYTQSP-DVGGLPDGVLK 81
BLAST of Csor.00g255040 vs. TAIR 10
Match:
AT4G10650.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )
HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0
Query: 92 EKNGYGCRKPNVRRMENIREFLNILQARVRELKKSGHSSHATTMVLLRNPNVTKLALATL 151
E+ Y N + +++ LN LQ++VREL K+GHS H TTM+LL PNV K AL+
Sbjct: 100 EERNYLSYAVNSHNKDCVKQLLNFLQSQVRELHKAGHSGHTTTMMLLGIPNVGKSALSNS 159
Query: 152 CIILGEL 159
+G +
Sbjct: 160 LHHIGRI 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O82497 | 3.6e-05 | 41.79 | DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DGP2 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6597232.1 | 2.01e-104 | 100.00 | DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022963288.1 | 6.19e-49 | 100.00 | uncharacterized protein LOC111463263 [Cucurbita moschata] | [more] |
XP_022974968.1 | 1.77e-48 | 98.82 | uncharacterized protein LOC111473815 [Cucurbita maxima] | [more] |
KAG7028703.1 | 2.22e-37 | 93.42 | DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma... | [more] |
KAA0049081.1 | 5.73e-31 | 71.59 | hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK174... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1HHB9 | 2.99e-49 | 100.00 | uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC1114632... | [more] |
A0A6J1IHW2 | 8.56e-49 | 98.82 | uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815... | [more] |
A0A5A7U641 | 2.78e-31 | 71.59 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0L967 | 3.59e-30 | 64.52 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1 | [more] |
A0A803NHX1 | 4.57e-18 | 58.33 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G10650.1 | 2.6e-06 | 41.79 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | [more] |