Csor.00g253650 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253650
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-H2 finger protein ATL16
Location	Csor_Chr06: 9625390 .. 9626361 (+)
RNA-Seq Expression	Csor.00g253650
Synteny	Csor.00g253650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGTTCCCCCAACTCAAATCTTCCCATTACCTTCCTCCATTTCCGCCGCCAATTCCTTCCCATTCCGACTCCACCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATTCTCGCCACCGCTTTCTTGCTCCTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGTCTCTCCCTCTCCTCGAGGCGCCGCCGTCCCACCGCCCACCACTCATTCTCCACCCATTCACACAAGGGGTCTCGACGAATCGGTCATTAGATCAATCCCGTTAGTTCAATACAAGAATTCAATACCCAGAGGAAAAACCTCGTCGGAATGCTCTGTTTGTTTGAGTGAATTTGGAGAGGATGAAACGGTGAGAATCATTCCCATTTGTTCACATCTTTTCACATTGATTGCATCGACATTTGGCTGCAAAACAATCCCAATTGCCCATTATGTCGAACCACCATTTCCAGCTCTACTCTGTTTCATCGATTTCCCCTGCCAACCTCCTCGCCGGCGGATCCAATCGGCGGTGGAAATGAAAGAGACTTCGTAGTAATTGAATTGGGTGGGATTAGAAACGACCCATCTGGTCAATTGTCACAAGAACGGCCAAATTCAGGGGAATGTCCGGCGACAACCGGAAAATTGGAACAGGGGAAGAAGCGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGACGAGAGGTTTTGTGTTCAGCCGATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGACAGATGTATTTGGCAGTGCAGGCGGCGCTGCGTGGGAGTACGGCGAGCCCCGGCGGCGATGGGTGTCATGGAAGAGGGAGGAGGTCTCTGTTTTCGTTTGGGAATGGGATGAGTTGCAGAAATGGCGTTGAAGTTCAGGCGGTGCGGTTGGAAGAGAGTTAG

mRNA sequence

ATGGAGTTGTTCCCCCAACTCAAATCTTCCCATTACCTTCCTCCATTTCCGCCGCCAATTCCTTCCCATTCCGACTCCACCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATTCTCGCCACCGCTTTCTTGCTCCTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGTCTCTCCCTCTCCTCGAGGCGCCGCCGTCCCACCGCCCACCACTCATTCTCCACCCATTCACACAAGGGCTCTACTCTGTTTCATCGATTTCCCCTGCCAACCTCCTCGCCGGCGGATCCAATCGGCGGTGGAAATGAAAGAGACTTCGTAGTAATTGAATTGGGTGGGATTAGAAACGACCCATCTGGTCAATTGTCACAAGAACGGCCAAATTCAGGGGAATGTCCGGCGACAACCGGAAAATTGGAACAGGGGAAGAAGCGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGACGAGAGGTTTTGTGTTCAGCCGATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGACAGATGTATTTGGCAGTGCAGGCGGCGCTGCGTGGGAGTACGGCGAGCCCCGGCGGCGATGGGTGTCATGGAAGAGGGAGGAGGTCTCTGTTTTCGTTTGGGAATGGGATGAGTTGCAGAAATGGCGTTGAAGTTCAGGCGGTGCGGTTGGAAGAGAGTTAG

Coding sequence (CDS)

ATGGAGTTGTTCCCCCAACTCAAATCTTCCCATTACCTTCCTCCATTTCCGCCGCCAATTCCTTCCCATTCCGACTCCACCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATTCTCGCCACCGCTTTCTTGCTCCTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGTCTCTCCCTCTCCTCGAGGCGCCGCCGTCCCACCGCCCACCACTCATTCTCCACCCATTCACACAAGGGCTCTACTCTGTTTCATCGATTTCCCCTGCCAACCTCCTCGCCGGCGGATCCAATCGGCGGTGGAAATGAAAGAGACTTCGTAGTAATTGAATTGGGTGGGATTAGAAACGACCCATCTGGTCAATTGTCACAAGAACGGCCAAATTCAGGGGAATGTCCGGCGACAACCGGAAAATTGGAACAGGGGAAGAAGCGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGACGAGAGGTTTTGTGTTCAGCCGATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGACAGATGTATTTGGCAGTGCAGGCGGCGCTGCGTGGGAGTACGGCGAGCCCCGGCGGCGATGGGTGTCATGGAAGAGGGAGGAGGTCTCTGTTTTCGTTTGGGAATGGGATGAGTTGCAGAAATGGCGTTGAAGTTCAGGCGGTGCGGTTGGAAGAGAGTTAG

Protein sequence

MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRIDLLRRLSLSSRRRRPTAHHSFSTHSHKGSTLFHRFPLPTSSPADPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSLFSFGNGMSCRNGVEVQAVRLEES

Homology

[Close]

BLAST of Csor.00g253650 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.2e-32
Identity = 128/356 (35.96%), Postives = 164/356 (46.07%), Query Frame = 0


Query: 7   LKSSHYLPPFPPPI--PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRID 66
           L+   + PP PPPI   + S  TSFPI+A+A+IGILATAFLL+SYYVFVI CCLNWHRID
Sbjct: 10  LRDLSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRID 69

Query: 67  LLRRLSLSSRRRR---PTAHHSFSTHSH-------------------------------- 126
           +L R SLS RRR    P   +S    S                                 
Sbjct: 70  ILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEE 129

Query: 127 --------------------------KGSTLFH--------------------------- 186
                                       S LFH                           
Sbjct: 130 EEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSF 189

Query: 187 ---RFPLPTSSPADPIGGGNERDFVVIELGGI----RNDP-SGQL--SQERPNSG----- 238
              R   P++SP + +    E ++VVIELG      R+ P  G+L   QER NSG     
Sbjct: 190 PPDRVSAPSTSPENLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNE 249

[Close]

BLAST of Csor.00g253650 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 112/356 (31.46%), Postives = 142/356 (39.89%), Query Frame = 0


Query: 15  PFPPPIPS-----------HSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRI 74
           P PPP PS            S  T+FPI+AIA+IGILATAFLL+SYY+FVI CCLNWH+I
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 75  DLLRRLSLSS-------------------------------RRRRPTAHHSFSTHSHKGS 134
           D+ RR   SS                               +R         S +S + S
Sbjct: 76  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 135

Query: 135 TLFHRFP-------LPT--------------------------------------SSPAD 194
              + F        +P                                       S+P+ 
Sbjct: 136 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSS 195

Query: 195 P---------------IGGGNERDFVVIELGGIRNDPSGQL-------SQERPNSGE--- 238
           P               +  G + DFVVIELG    +    +        QER  S E   
Sbjct: 196 PRENSPHSRNRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVST 255

[Close]

BLAST of Csor.00g253650 vs. NCBI nr
Match: KAG6597371.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 498 bits (1282), Expect = 1.05e-177
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPTAHHSFSTHSHKGSTLFHRFPLPTSSPADPIGGGNERDFVVI 120
           HRIDLLRRLSLSSRRRRPTAHHSFSTHSHKGSTLFHRFPLPTSSPADPIGGGNERDFVVI
Sbjct: 61  HRIDLLRRLSLSSRRRRPTAHHSFSTHSHKGSTLFHRFPLPTSSPADPIGGGNERDFVVI 120

Query: 121 ELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFC 180
           ELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFC
Sbjct: 121 ELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFC 180

Query: 181 VQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSLFSFGNGMSCRNGVE 240
           VQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSLFSFGNGMSCRNGVE
Sbjct: 181 VQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSLFSFGNGMSCRNGVE 240

Query: 241 VQAVRLEES 249
           VQAVRLEES
Sbjct: 241 VQAVRLEES 249

[Close]

BLAST of Csor.00g253650 vs. NCBI nr
Match: KAG7028833.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 437 bits (1123), Expect = 2.56e-152
Identity = 241/323 (74.61%), Postives = 241/323 (74.61%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPT-AHHSFSTH-------------------------------- 120
           HRIDLLRRLSLSSRRRRP    HS   H                                
Sbjct: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120

Query: 121 -----------------SH------------------------KGSTLFHRFPLPTSSPA 180
                            SH                          STLFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 249
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300

[Close]

BLAST of Csor.00g253650 vs. NCBI nr
Match: XP_022942390.1 (RING-H2 finger protein ATL16 [Cucurbita moschata])

HSP 1 Score: 428 bits (1100), Expect = 8.11e-149
Identity = 237/323 (73.37%), Postives = 238/323 (73.68%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MESFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPT-AHHSFSTH-------------------------------- 120
           HRIDLLRRLSLSSRRRRP    HS   H                                
Sbjct: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIARGKTSSECSV 120

Query: 121 -----------------SH------------------------KGSTLFHRFPLPTSSPA 180
                            SH                          STLFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPA  GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPAAAGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 249
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

[Close]

BLAST of Csor.00g253650 vs. NCBI nr
Match: XP_023540628.1 (RING-H2 finger protein ATL16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419 bits (1076), Expect = 3.65e-145
Identity = 234/323 (72.45%), Postives = 235/323 (72.76%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MEFFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRP---TAHHSFSTH------------------------------ 120
           HRIDLLRRL LSSRRRRP   T      T                               
Sbjct: 61  HRIDLLRRLPLSSRRRRPPPTTPSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120

Query: 121 -----------------SH------------------------KGSTLFHRFPLPTSSPA 180
                            SH                          S LFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSALFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPAT GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATAGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 249
           DE IDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DESIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

[Close]

BLAST of Csor.00g253650 vs. NCBI nr
Match: XP_022975064.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 418 bits (1075), Expect = 5.18e-145
Identity = 231/327 (70.64%), Postives = 235/327 (71.87%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQ+KSS YLPPFPPP PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MEFFPQIKSSQYLPPFPPPNPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPTAHHSFSTHSH------------------------------- 120
           HRIDLLRRLSLSSRRRRP      +THS                                
Sbjct: 61  HRIDLLRRLSLSSRRRRPAP----NTHSPPIDTRGLDESVIRSIPLVQYKNSIARGKTSS 120

Query: 121 -----------------------------------------------KGSTLFHRFPLPT 180
                                                            S LFHRFPLPT
Sbjct: 121 ECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSALFHRFPLPT 180

Query: 181 SSPADPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKV 240
           SSPA+PIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKR KLQKV
Sbjct: 181 SSPAEPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRWKLQKV 240

Query: 241 TSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRG 249
           TSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRG
Sbjct: 241 TSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRG 300

[Close]

BLAST of Csor.00g253650 vs. ExPASy TrEMBL
Match: A0A6J1FW76 (RING-H2 finger protein ATL16 OS=Cucurbita moschata OX=3662 GN=LOC111447447 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 3.93e-149
Identity = 237/323 (73.37%), Postives = 238/323 (73.68%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MESFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPT-AHHSFSTH-------------------------------- 120
           HRIDLLRRLSLSSRRRRP    HS   H                                
Sbjct: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIARGKTSSECSV 120

Query: 121 -----------------SH------------------------KGSTLFHRFPLPTSSPA 180
                            SH                          STLFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPA  GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPAAAGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 249
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

[Close]

BLAST of Csor.00g253650 vs. ExPASy TrEMBL
Match: A0A6J1IJC3 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111474033 PE=4 SV=1)

HSP 1 Score: 418 bits (1075), Expect = 2.51e-145
Identity = 231/327 (70.64%), Postives = 235/327 (71.87%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQ+KSS YLPPFPPP PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MEFFPQIKSSQYLPPFPPPNPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPTAHHSFSTHSH------------------------------- 120
           HRIDLLRRLSLSSRRRRP      +THS                                
Sbjct: 61  HRIDLLRRLSLSSRRRRPAP----NTHSPPIDTRGLDESVIRSIPLVQYKNSIARGKTSS 120

Query: 121 -----------------------------------------------KGSTLFHRFPLPT 180
                                                            S LFHRFPLPT
Sbjct: 121 ECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSALFHRFPLPT 180

Query: 181 SSPADPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKV 240
           SSPA+PIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKR KLQKV
Sbjct: 181 SSPAEPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRWKLQKV 240

Query: 241 TSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRG 249
           TSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRG
Sbjct: 241 TSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRG 300

[Close]

BLAST of Csor.00g253650 vs. ExPASy TrEMBL
Match: A0A5D3D010 (RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001510 PE=4 SV=1)

HSP 1 Score: 330 bits (846), Expect = 1.58e-110
Identity = 194/327 (59.33%), Postives = 212/327 (64.83%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++K+S ++PPFPPP PSHS   SFPIIAIAIIGIL TAFLLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIKTSQHIPPFPPPNPSHS---SFPIIAIAIIGILVTAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPTA-----------------------HHSFSTHSHK------- 120
           HR DL+RRLS SS RR P+                        H+  S  + K       
Sbjct: 61  HRFDLIRRLSPSSTRRLPSPTAYSPAFETRGLDESVIRSIPLLHYKKSMPNEKTLSECAV 120

Query: 121 --------------------------------------------GSTLFHRFPLPTSSPA 180
                                                        S LFHRFPLP+SSP 
Sbjct: 121 CLSEFEEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTSISSSVLFHRFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIG G ERDFVVIELGGIRNDPSGQ SQER NS E PA   KLEQGKK +KLQKVTSLG
Sbjct: 181 DPIGAGGERDFVVIELGGIRNDPSGQFSQERANSRELPAV--KLEQGKKWQKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAAL----RGSTASPGGDGCHGRG 249
           DEWIDTREKDE+F +QPIRRSVSMDSSAERQMYLAVQAAL    RGS  SPGGDGC+GRG
Sbjct: 241 DEWIDTREKDEQFFIQPIRRSVSMDSSAERQMYLAVQAALQQSRRGSEVSPGGDGCNGRG 300

[Close]

BLAST of Csor.00g253650 vs. ExPASy TrEMBL
Match: A0A1S3AWQ9 (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103483603 PE=4 SV=1)

HSP 1 Score: 330 bits (846), Expect = 1.58e-110
Identity = 194/327 (59.33%), Postives = 212/327 (64.83%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++K+S ++PPFPPP PSHS   SFPIIAIAIIGIL TAFLLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIKTSQHIPPFPPPNPSHS---SFPIIAIAIIGILVTAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPTA-----------------------HHSFSTHSHK------- 120
           HR DL+RRLS SS RR P+                        H+  S  + K       
Sbjct: 61  HRFDLIRRLSPSSTRRLPSPTAYSPAFETRGLDESVIRSIPLLHYKKSMPNEKTLSECAV 120

Query: 121 --------------------------------------------GSTLFHRFPLPTSSPA 180
                                                        S LFHRFPLP+SSP 
Sbjct: 121 CLSEFEEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTSISSSVLFHRFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIG G ERDFVVIELGGIRNDPSGQ SQER NS E PA   KLEQGKK +KLQKVTSLG
Sbjct: 181 DPIGAGGERDFVVIELGGIRNDPSGQFSQERANSRELPAV--KLEQGKKWQKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAAL----RGSTASPGGDGCHGRG 249
           DEWIDTREKDE+F +QPIRRSVSMDSSAERQMYLAVQAAL    RGS  SPGGDGC+GRG
Sbjct: 241 DEWIDTREKDEQFFIQPIRRSVSMDSSAERQMYLAVQAALQQSRRGSEVSPGGDGCNGRG 300

[Close]

BLAST of Csor.00g253650 vs. ExPASy TrEMBL
Match: A0A0A0L8B0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G135640 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 3.46e-107
Identity = 188/327 (57.49%), Postives = 211/327 (64.53%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++K+S ++PPFPPP PSHS   SFPIIAIAIIGIL TAFLLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIKTSQHIPPFPPPNPSHS---SFPIIAIAIIGILVTAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPTA-----------------------HHSFSTHSHKGST---- 120
           HR DL+RRLS SS R  P+                        H++ S  +HK S+    
Sbjct: 61  HRFDLIRRLSPSSTRPLPSPTAYSPALHTRGLDESVIRSIPLLHYNKSMPNHKTSSECAV 120

Query: 121 -----------------------------------------------LFHRFPLPTSSPA 180
                                                          LFH FPLP+SSP 
Sbjct: 121 CLSEFQEHETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSLLFHPFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPI    ERDF+VIELGGIRN PSGQ SQER NS E PA   KLEQGKK +KLQKVTSLG
Sbjct: 181 DPIAAATERDFLVIELGGIRNHPSGQFSQERANSRELPAV--KLEQGKKWQKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALR----GSTASPGGDGCHGRG 249
           DEWIDTREKDE+FC+QPIRRSVSMDSSAERQMY+AVQAAL+    G+  SPGGDGC+GRG
Sbjct: 241 DEWIDTREKDEQFCIQPIRRSVSMDSSAERQMYVAVQAALQQSRHGNEVSPGGDGCNGRG 300

[Close]

BLAST of Csor.00g253650 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-33
Identity = 128/356 (35.96%), Postives = 164/356 (46.07%), Query Frame = 0


Query: 7   LKSSHYLPPFPPPI--PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRID 66
           L+   + PP PPPI   + S  TSFPI+A+A+IGILATAFLL+SYYVFVI CCLNWHRID
Sbjct: 10  LRDLSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRID 69

Query: 67  LLRRLSLSSRRRR---PTAHHSFSTHSH-------------------------------- 126
           +L R SLS RRR    P   +S    S                                 
Sbjct: 70  ILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEE 129

Query: 127 --------------------------KGSTLFH--------------------------- 186
                                       S LFH                           
Sbjct: 130 EEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSF 189

Query: 187 ---RFPLPTSSPADPIGGGNERDFVVIELGGI----RNDP-SGQL--SQERPNSG----- 238
              R   P++SP + +    E ++VVIELG      R+ P  G+L   QER NSG     
Sbjct: 190 PPDRVSAPSTSPENLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNE 249

[Close]

BLAST of Csor.00g253650 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-25
Identity = 112/356 (31.46%), Postives = 142/356 (39.89%), Query Frame = 0


Query: 15  PFPPPIPS-----------HSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRI 74
           P PPP PS            S  T+FPI+AIA+IGILATAFLL+SYY+FVI CCLNWH+I
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 75  DLLRRLSLSS-------------------------------RRRRPTAHHSFSTHSHKGS 134
           D+ RR   SS                               +R         S +S + S
Sbjct: 76  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 135

Query: 135 TLFHRFP-------LPT--------------------------------------SSPAD 194
              + F        +P                                       S+P+ 
Sbjct: 136 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSS 195

Query: 195 P---------------IGGGNERDFVVIELGGIRNDPSGQL-------SQERPNSGE--- 238
           P               +  G + DFVVIELG    +    +        QER  S E   
Sbjct: 196 PRENSPHSRNRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVST 255

The following BLAST results are available for this feature:

BLAST of Csor.00g253650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSW9	9.2e-32	35.96	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	1.2e-23	31.46	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]

BLAST of Csor.00g253650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597371.1	1.05e-177	100.00	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028833.1	2.56e-152	74.61	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022942390.1	8.11e-149	73.37	RING-H2 finger protein ATL16 [Cucurbita moschata]	[more]
XP_023540628.1	3.65e-145	72.45	RING-H2 finger protein ATL16 [Cucurbita pepo subsp. pepo]	[more]
XP_022975064.1	5.18e-145	70.64	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]

BLAST of Csor.00g253650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW76	3.93e-149	73.37	RING-H2 finger protein ATL16 OS=Cucurbita moschata OX=3662 GN=LOC111447447 PE=4 ...	[more]
A0A6J1IJC3	2.51e-145	70.64	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111474033 PE...	[more]
A0A5D3D010	1.58e-110	59.33	RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AWQ9	1.58e-110	59.33	RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103483603 PE=4 SV=1	[more]
A0A0A0L8B0	3.46e-107	57.49	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G135640 P...	[more]

BLAST of Csor.00g253650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	6.6e-33	35.96	RING/U-box superfamily protein	[more]
AT1G04360.1	8.6e-25	31.46	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..155
None	No IPR available	PANTHER	PTHR46913:SF1	RING-H2 FINGER PROTEIN ATL16	coord: 19..88 coord: 103..239
IPR044600	RING-H2 finger protein ATL1/ATL16	PANTHER	PTHR46913	RING-H2 FINGER PROTEIN ATL16	coord: 103..239 coord: 19..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253650.m01	Csor.00g253650.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity