Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA
mRNA sequence
ATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA
Coding sequence (CDS)
ATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA
Protein sequence
MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI
Homology
BLAST of Csor.00g253500 vs. NCBI nr
Match:
KAG6597386.1 (hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028845.1 hypothetical protein SDJN02_10027, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 194 bits (494), Expect = 1.83e-62
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query: 1 MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG
Sbjct: 1 MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
Query: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI
Sbjct: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
BLAST of Csor.00g253500 vs. NCBI nr
Match:
KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])
HSP 1 Score: 141 bits (355), Expect = 2.57e-41
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 0
Query: 1 MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
MA +L+LLQL PN AGRTL EKP MVRR MEL LKLQSLQRV VPPSGPSGCTFIPG
Sbjct: 1 MAILLLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPG 60
Query: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
TNGPGCPL+ RHY N S QRPST RRYA P RVV+ L+
Sbjct: 61 TNGPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95
BLAST of Csor.00g253500 vs. NCBI nr
Match:
KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])
HSP 1 Score: 135 bits (340), Expect = 4.81e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0
Query: 4 ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
IL+LLQL PN AGRTL EKP MVRR MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 3 ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 62
Query: 64 PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
PGCPL+ RHY S +RPST RR+A P RVV+AL+
Sbjct: 63 PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94
BLAST of Csor.00g253500 vs. NCBI nr
Match:
TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])
HSP 1 Score: 135 bits (340), Expect = 6.31e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0
Query: 4 ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
IL+LLQL PN AGRTL EKP MVRR MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 12 ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 71
Query: 64 PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
PGCPL+ RHY S +RPST RR+A P RVV+AL+
Sbjct: 72 PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
BLAST of Csor.00g253500 vs. NCBI nr
Match:
KAG7018772.1 (hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 110 bits (274), Expect = 4.21e-29
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 12 PNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVR 71
PN AGRTL E P+MVRR EL+ LKLKLQSLQRV VPPSGPSGCTFIPGTNGPGCP +VR
Sbjct: 14 PNIAGRTLHENPSMVRRTELK--LKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 73
Query: 72 HYAGNGSKQRPS 83
HY N S +RPS
Sbjct: 74 HYTINHSTRRPS 83
BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match:
A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)
HSP 1 Score: 141 bits (355), Expect = 1.24e-41
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 0
Query: 1 MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
MA +L+LLQL PN AGRTL EKP MVRR MEL LKLQSLQRV VPPSGPSGCTFIPG
Sbjct: 1 MAILLLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPG 60
Query: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
TNGPGCPL+ RHY N S QRPST RRYA P RVV+ L+
Sbjct: 61 TNGPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95
BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match:
A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)
HSP 1 Score: 135 bits (340), Expect = 2.33e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0
Query: 4 ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
IL+LLQL PN AGRTL EKP MVRR MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 3 ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 62
Query: 64 PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
PGCPL+ RHY S +RPST RR+A P RVV+AL+
Sbjct: 63 PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94
BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match:
A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)
HSP 1 Score: 135 bits (340), Expect = 3.05e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0
Query: 4 ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
IL+LLQL PN AGRTL EKP MVRR MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 12 ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 71
Query: 64 PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
PGCPL+ RHY S +RPST RR+A P RVV+AL+
Sbjct: 72 PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match:
A0A5N6R1J5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 6.31e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0
Query: 29 RELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGN 76
R L E ++LQSLQR VPPSG SGCT+IPGT GPGCP++ HYAG+
Sbjct: 17 RPLHAEEDVRLQSLQRGNVPPSGASGCTYIPGTGGPGCPVKEMHYAGD 64
BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match:
A0A5N6QYI5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 1.31e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 0
Query: 29 RELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGNGSKQRP---STL 88
R L E ++LQSLQR VPPSG SGCT+IPGT GPGCP++ +YAG+ + RP S
Sbjct: 26 RPLHAEEDVRLQSLQRGDVPPSGASGCTYIPGTGGPGCPVKEMNYAGD-ALPRPAMASAF 85
Query: 89 RRYATPVRVVEA 97
R P V A
Sbjct: 86 PRLVVPFGVAAA 96
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6597386.1 | 1.83e-62 | 100.00 | hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN56901.1 | 2.57e-41 | 74.75 | hypothetical protein Csa_009866 [Cucumis sativus] | [more] |
KAA0049291.1 | 4.81e-39 | 73.96 | putative transmembrane protein [Cucumis melo var. makuwa] | [more] |
TYK17267.1 | 6.31e-39 | 73.96 | putative transmembrane protein [Cucumis melo var. makuwa] | [more] |
KAG7018772.1 | 4.21e-29 | 77.78 | hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LA00 | 1.24e-41 | 74.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1 | [more] |
A0A5A7U6N3 | 2.33e-39 | 73.96 | Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
A0A5D3CZY7 | 3.05e-39 | 73.96 | Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5N6R1J5 | 6.31e-13 | 64.58 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1 | [more] |
A0A5N6QYI5 | 1.31e-11 | 51.39 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |