Csor.00g253500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g253500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 9683906 .. 9684205 (+)
RNA-Seq Expression	Csor.00g253500
Synteny	Csor.00g253500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA

mRNA sequence

ATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA

Coding sequence (CDS)

ATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTCCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA

Protein sequence

MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI

Homology

[Close]

BLAST of Csor.00g253500 vs. NCBI nr
Match: KAG6597386.1 (hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028845.1 hypothetical protein SDJN02_10027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194 bits (494), Expect = 1.83e-62
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
          MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG
Sbjct: 1  MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60

Query: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
          TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI
Sbjct: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99

[Close]

BLAST of Csor.00g253500 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 2.57e-41
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
          MA +L+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPG
Sbjct: 1  MAILLLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPG 60

Query: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
          TNGPGCPL+ RHY  N S QRPST RRYA P RVV+ L+
Sbjct: 61 TNGPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of Csor.00g253500 vs. NCBI nr
Match: KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 4.81e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 4  ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
          IL+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 3  ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 62

Query: 64 PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
          PGCPL+ RHY    S +RPST RR+A P RVV+AL+
Sbjct: 63 PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

[Close]

BLAST of Csor.00g253500 vs. NCBI nr
Match: TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 6.31e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 4   ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
           IL+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 12  ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 71

Query: 64  PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
           PGCPL+ RHY    S +RPST RR+A P RVV+AL+
Sbjct: 72  PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

[Close]

BLAST of Csor.00g253500 vs. NCBI nr
Match: KAG7018772.1 (hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (274), Expect = 4.21e-29
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 12 PNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVR 71
          PN AGRTL E P+MVRR EL+  LKLKLQSLQRV VPPSGPSGCTFIPGTNGPGCP +VR
Sbjct: 14 PNIAGRTLHENPSMVRRTELK--LKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 73

Query: 72 HYAGNGSKQRPS 83
          HY  N S +RPS
Sbjct: 74 HYTINHSTRRPS 83

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BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match: A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.24e-41
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60
          MA +L+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPG
Sbjct: 1  MAILLLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPG 60

Query: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
          TNGPGCPL+ RHY  N S QRPST RRYA P RVV+ L+
Sbjct: 61 TNGPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match: A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 2.33e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 4  ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
          IL+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 3  ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 62

Query: 64 PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
          PGCPL+ RHY    S +RPST RR+A P RVV+AL+
Sbjct: 63 PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

[Close]

BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match: A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 3.05e-39
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 4   ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63
           IL+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 12  ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 71

Query: 64  PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99
           PGCPL+ RHY    S +RPST RR+A P RVV+AL+
Sbjct: 72  PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

[Close]

BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match: A0A5N6R1J5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.31e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 29 RELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGN 76
          R L  E  ++LQSLQR  VPPSG SGCT+IPGT GPGCP++  HYAG+
Sbjct: 17 RPLHAEEDVRLQSLQRGNVPPSGASGCTYIPGTGGPGCPVKEMHYAGD 64

[Close]

BLAST of Csor.00g253500 vs. ExPASy TrEMBL
Match: A0A5N6QYI5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.31e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 29 RELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGNGSKQRP---STL 88
          R L  E  ++LQSLQR  VPPSG SGCT+IPGT GPGCP++  +YAG+ +  RP   S  
Sbjct: 26 RPLHAEEDVRLQSLQRGDVPPSGASGCTYIPGTGGPGCPVKEMNYAGD-ALPRPAMASAF 85

Query: 89 RRYATPVRVVEA 97
           R   P  V  A
Sbjct: 86 PRLVVPFGVAAA 96

The following BLAST results are available for this feature:

BLAST of Csor.00g253500 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g253500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597386.1	1.83e-62	100.00	hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56901.1	2.57e-41	74.75	hypothetical protein Csa_009866 [Cucumis sativus]	[more]
KAA0049291.1	4.81e-39	73.96	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
TYK17267.1	6.31e-39	73.96	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
KAG7018772.1	4.21e-29	77.78	hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g253500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA00	1.24e-41	74.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1	[more]
A0A5A7U6N3	2.33e-39	73.96	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3CZY7	3.05e-39	73.96	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5N6R1J5	6.31e-13	64.58	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1	[more]
A0A5N6QYI5	1.31e-11	51.39	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1	[more]

BLAST of Csor.00g253500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF5	TRANSMEMBRANE PROTEIN	coord: 3..94
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 3..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g253500.m01	Csor.00g253500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane