Csor.00g235930 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g235930
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCLAVATA3/ESR-related protein
LocationCsor_Chr08: 6735520 .. 6735792 (-)
RNA-Seq ExpressionCsor.00g235930
SyntenyCsor.00g235930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGCTTAAAGAGCATTATTTCTCCACAAGCTTAACCTCAACCAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCCTTATAACTTCTCGACCCTTCCGAGCTCAGCCTCAGCAAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCGAGCCAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACCACCAACAAGTAA

mRNA sequence

ATGGCAAGGCTTAAAGAGCATTATTTCTCCACAAGCTTAACCTCAACCAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCCTTATAACTTCTCGACCCTTCCGAGCTCAGCCTCAGCAAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCGAGCCAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACCACCAACAAGTAA

Coding sequence (CDS)

ATGGCAAGGCTTAAAGAGCATTATTTCTCCACAAGCTTAACCTCAACCAAGTCTCGAGCTTGCTTCTTCCTCTTTCTCCTCCTCCTTCCTTATAACTTCTCGACCCTTCCGAGCTCAGCCTCAGCAAGTACTCCATCTCGTCCTCCTTCATCTTCTTTGGCCATGGAAGAACAAGCCTTCTCTAGCCCTTATTCGAGCCAGAGGACATTACAACAATTTGAAGCAGCTATGCATGAAGTCCCTAGTGGCCCAAATCCCACCACCAACAAGTAA

Protein sequence

MARLKEHYFSTSLTSTKSRACFFLFLLLLPYNFSTLPSSASASTPSRPPSSSLAMEEQAFSSPYSSQRTLQQFEAAMHEVPSGPNPTTNK
Homology
BLAST of Csor.00g235930 vs. NCBI nr
Match: KAG6593788.1 (hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (431), Expect = 3.90e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  MARLKEHYFSTSLTSTKSRACFFLFLLLLPYNFSTLPSSASASTPSRPPSSSLAMEEQAF 60
          MARLKEHYFSTSLTSTKSRACFFLFLLLLPYNFSTLPSSASASTPSRPPSSSLAMEEQAF
Sbjct: 1  MARLKEHYFSTSLTSTKSRACFFLFLLLLPYNFSTLPSSASASTPSRPPSSSLAMEEQAF 60

Query: 61 SSPYSSQRTLQQFEAAMHEVPSGPNPTTNK 90
          SSPYSSQRTLQQFEAAMHEVPSGPNPTTNK
Sbjct: 61 SSPYSSQRTLQQFEAAMHEVPSGPNPTTNK 90

BLAST of Csor.00g235930 vs. NCBI nr
Match: KAG6574868.1 (CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 1.19e-24
Identity = 64/97 (65.98%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1  MARLKEHYFSTSLT-STKSRACFFLFLLLL-----PYNFSTLPSS-ASASTPSRPPSSSL 60
          MA+ +++YFSTSLT STKS+ACFFLFLL+L     PY FST PSS AS S PSRPPSS  
Sbjct: 1  MAKFEDNYFSTSLTTSTKSQACFFLFLLVLLLLAVPYRFSTSPSSMASTSNPSRPPSSK- 60

Query: 61 AMEEQAFSSPYSSQRTLQQFEAAMHEVPSGPNPTTNK 90
          AM EQAF  P        QFEA+MHEVPSGPNPT+NK
Sbjct: 61 AMAEQAFPRP--------QFEASMHEVPSGPNPTSNK 88

BLAST of Csor.00g235930 vs. NCBI nr
Match: KGN61461.1 (hypothetical protein Csa_006135 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 6.51e-11
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 17 KSRACFFLFLLLL-----PYNFSTLPSSASASTPSRPPSSSLAMEEQAFSSPYSSQRTLQ 76
          KS+ACFFLFLL+L     P+  ST+P+     TPSRPPS+ +AM                
Sbjct: 10 KSQACFFLFLLVLLLLVVPHRCSTVPN-----TPSRPPSNFMAM---------------- 66

Query: 77 QFEAAMHEVPSGPNPTTNK 90
           FEAAMHEVPSGPNPT+NK
Sbjct: 70 -FEAAMHEVPSGPNPTSNK 66

BLAST of Csor.00g235930 vs. ExPASy TrEMBL
Match: A0A0A0LNB8 (CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.15e-11
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 17 KSRACFFLFLLLL-----PYNFSTLPSSASASTPSRPPSSSLAMEEQAFSSPYSSQRTLQ 76
          KS+ACFFLFLL+L     P+  ST+P+     TPSRPPS+ +AM                
Sbjct: 10 KSQACFFLFLLVLLLLVVPHRCSTVPN-----TPSRPPSNFMAM---------------- 66

Query: 77 QFEAAMHEVPSGPNPTTNK 90
           FEAAMHEVPSGPNPT+NK
Sbjct: 70 -FEAAMHEVPSGPNPTSNK 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593788.13.90e-53100.00hypothetical protein SDJN03_13264, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6574868.11.19e-2465.98CLAVATA3/ESR (CLE)-related protein TDIF, partial [Cucurbita argyrosperma subsp. ... [more]
KGN61461.16.51e-1151.90hypothetical protein Csa_006135 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LNB83.15e-1151.90CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g235930.m01Csor.00g235930.m01mRNA