Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGGATGGTGCCGGTGACGGTGATCTCACGGAATCAGTATCTATGTTTTCTTCCCTTCCACAACCTAATTCGACGAAGTTGCAGGAACCTAAATCAAATCCCCCATCCTCGGAGTCCCAGCCAAAAAAGGTCGTCGTATTTAAGCCACCCGTTAACTCTTCTTTGTTGAAATTGGACGAAGACGAGGAGGACGACGACGACGATGAAGAAGAAGAAGAAATAAGGCGCAGAAAGGCATCTCAATCCTCGACAACGTTGAAAATGCATGGAATTCGACAACGTTGGGAGTTATTTCGAGTTCAGGCTCTCGGCGAAGATCGATTCTCGATACAGATGTTCGGGTATCGTCTTCTGATAATTCGGGCAGCACTCAAAAGATTGATCACAGTACTGAAAACTACGACAGTTTTGTAA
mRNA sequence
ATGGTGATGGATGGTGCCGGTGACGGTGATCTCACGGAATCAGTATCTATGTTTTCTTCCCTTCCACAACCTAATTCGACGAAGTTGCAGGAACCTAAATCAAATCCCCCATCCTCGGAGTCCCAGCCAAAAAAGGTCGTCGTATTTAAGCCACCCGTTAACTCTTCTTTGTTGAAATTGGACGAAGACGAGGAGGACGACGACGACGATGAAGAAGAAGAAGAAATAAGGCGCAGAAAGGCATCTCAATCCTCGACAACGTTGAAAATGCATGGAATTCGACAACGTTGGGAGTTATTTCGAGTTCAGGCTCTCGGCGAAGATCGATTCTCGATACAGATGTTCGGGTATCGTCTTCTGATAATTCGGGCAGCACTCAAAAGATTGATCACAGTACTGAAAACTACGACAGTTTTGTAA
Coding sequence (CDS)
ATGGTGATGGATGGTGCCGGTGACGGTGATCTCACGGAATCAGTATCTATGTTTTCTTCCCTTCCACAACCTAATTCGACGAAGTTGCAGGAACCTAAATCAAATCCCCCATCCTCGGAGTCCCAGCCAAAAAAGGTCGTCGTATTTAAGCCACCCGTTAACTCTTCTTTGTTGAAATTGGACGAAGACGAGGAGGACGACGACGACGATGAAGAAGAAGAAGAAATAAGGCGCAGAAAGGCATCTCAATCCTCGACAACGTTGAAAATGCATGGAATTCGACAACGTTGGGAGTTATTTCGAGTTCAGGCTCTCGGCGAAGATCGATTCTCGATACAGATGTTCGGGTATCGTCTTCTGATAATTCGGGCAGCACTCAAAAGATTGATCACAGTACTGAAAACTACGACAGTTTTGTAA
Protein sequence
MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLIIRAALKRLITVLKTTTVL
Homology
BLAST of Csor.00g217840 vs. NCBI nr
Match:
KAG6589688.1 (hypothetical protein SDJN03_15111, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 258 bits (658), Expect = 3.38e-86
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKL 60
MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKL
Sbjct: 1 MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKL 60
Query: 61 DEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLL 120
DEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLL
Sbjct: 61 DEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLL 120
Query: 121 IIRAALKRLITVLKTTTVL 139
IIRAALKRLITVLKTTTVL
Sbjct: 121 IIRAALKRLITVLKTTTVL 139
BLAST of Csor.00g217840 vs. NCBI nr
Match:
KAG7023367.1 (hypothetical protein SDJN02_14392, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 253 bits (646), Expect = 9.95e-82
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 3 MDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDE 62
MDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDE
Sbjct: 1 MDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDE 60
Query: 63 DEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLII 122
DE+DDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLII
Sbjct: 61 DEDDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLII 120
Query: 123 RAALKRLITVLKTTTVL 139
RAALKRLITVLKTTTVL
Sbjct: 121 RAALKRLITVLKTTTVL 137
BLAST of Csor.00g217840 vs. NCBI nr
Match:
XP_004146373.1 (proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa_019895 [Cucumis sativus])
HSP 1 Score: 124 bits (310), Expect = 3.31e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 135 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 194
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 195 EDDDDDDEEEEEIRRRKASQSS 215
BLAST of Csor.00g217840 vs. NCBI nr
Match:
TYK28575.1 (ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa])
HSP 1 Score: 124 bits (310), Expect = 3.35e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214
BLAST of Csor.00g217840 vs. NCBI nr
Match:
XP_008453553.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1 ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa])
HSP 1 Score: 124 bits (310), Expect = 3.35e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214
BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match:
A0A0A0LUQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1)
HSP 1 Score: 124 bits (310), Expect = 1.60e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 135 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 194
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 195 EDDDDDDEEEEEIRRRKASQSS 215
BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match:
A0A5D3DZ12 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002230 PE=4 SV=1)
HSP 1 Score: 124 bits (310), Expect = 1.62e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214
BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match:
A0A5A7USS5 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005320 PE=4 SV=1)
HSP 1 Score: 124 bits (310), Expect = 1.62e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214
BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match:
A0A1S3BWI7 (ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234 PE=4 SV=1)
HSP 1 Score: 124 bits (310), Expect = 1.62e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214
BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match:
A0A6J1KT25 (ubiquitin carboxyl-terminal hydrolase 36 OS=Cucurbita maxima OX=3661 GN=LOC111496165 PE=4 SV=1)
HSP 1 Score: 119 bits (299), Expect = 5.99e-29
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0
Query: 4 DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
DG GD +LTES SMFSSLPQPNS LQ+ KSNP S+ESQPK+VV+FKPPVNSSLLKL ED
Sbjct: 134 DGDGDENLTESASMFSSLPQPNSQNLQKSKSNPSSTESQPKRVVLFKPPVNSSLLKLGED 193
Query: 64 EEDDDDDEEEEEIRRRKASQSS 85
+ DDDDDEEEEEIRRRKASQSS
Sbjct: 194 D-DDDDDEEEEEIRRRKASQSS 214
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6589688.1 | 3.38e-86 | 100.00 | hypothetical protein SDJN03_15111, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7023367.1 | 9.95e-82 | 99.27 | hypothetical protein SDJN02_14392, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_004146373.1 | 3.31e-30 | 84.15 | proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa... | [more] |
TYK28575.1 | 3.35e-30 | 84.15 | ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa] | [more] |
XP_008453553.1 | 3.35e-30 | 84.15 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LUQ8 | 1.60e-30 | 84.15 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1 | [more] |
A0A5D3DZ12 | 1.62e-30 | 84.15 | Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7USS5 | 1.62e-30 | 84.15 | Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A1S3BWI7 | 1.62e-30 | 84.15 | ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234... | [more] |
A0A6J1KT25 | 5.99e-29 | 81.71 | ubiquitin carboxyl-terminal hydrolase 36 OS=Cucurbita maxima OX=3661 GN=LOC11149... | [more] |
Match Name | E-value | Identity | Description | |