Csor.00g217840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g217840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ubiquitin carboxyl-terminal hydrolase 36
Location	Csor_Chr10: 1819173 .. 1819592 (-)
RNA-Seq Expression	Csor.00g217840
Synteny	Csor.00g217840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGGATGGTGCCGGTGACGGTGATCTCACGGAATCAGTATCTATGTTTTCTTCCCTTCCACAACCTAATTCGACGAAGTTGCAGGAACCTAAATCAAATCCCCCATCCTCGGAGTCCCAGCCAAAAAAGGTCGTCGTATTTAAGCCACCCGTTAACTCTTCTTTGTTGAAATTGGACGAAGACGAGGAGGACGACGACGACGATGAAGAAGAAGAAGAAATAAGGCGCAGAAAGGCATCTCAATCCTCGACAACGTTGAAAATGCATGGAATTCGACAACGTTGGGAGTTATTTCGAGTTCAGGCTCTCGGCGAAGATCGATTCTCGATACAGATGTTCGGGTATCGTCTTCTGATAATTCGGGCAGCACTCAAAAGATTGATCACAGTACTGAAAACTACGACAGTTTTGTAA

mRNA sequence

ATGGTGATGGATGGTGCCGGTGACGGTGATCTCACGGAATCAGTATCTATGTTTTCTTCCCTTCCACAACCTAATTCGACGAAGTTGCAGGAACCTAAATCAAATCCCCCATCCTCGGAGTCCCAGCCAAAAAAGGTCGTCGTATTTAAGCCACCCGTTAACTCTTCTTTGTTGAAATTGGACGAAGACGAGGAGGACGACGACGACGATGAAGAAGAAGAAGAAATAAGGCGCAGAAAGGCATCTCAATCCTCGACAACGTTGAAAATGCATGGAATTCGACAACGTTGGGAGTTATTTCGAGTTCAGGCTCTCGGCGAAGATCGATTCTCGATACAGATGTTCGGGTATCGTCTTCTGATAATTCGGGCAGCACTCAAAAGATTGATCACAGTACTGAAAACTACGACAGTTTTGTAA

Coding sequence (CDS)

ATGGTGATGGATGGTGCCGGTGACGGTGATCTCACGGAATCAGTATCTATGTTTTCTTCCCTTCCACAACCTAATTCGACGAAGTTGCAGGAACCTAAATCAAATCCCCCATCCTCGGAGTCCCAGCCAAAAAAGGTCGTCGTATTTAAGCCACCCGTTAACTCTTCTTTGTTGAAATTGGACGAAGACGAGGAGGACGACGACGACGATGAAGAAGAAGAAGAAATAAGGCGCAGAAAGGCATCTCAATCCTCGACAACGTTGAAAATGCATGGAATTCGACAACGTTGGGAGTTATTTCGAGTTCAGGCTCTCGGCGAAGATCGATTCTCGATACAGATGTTCGGGTATCGTCTTCTGATAATTCGGGCAGCACTCAAAAGATTGATCACAGTACTGAAAACTACGACAGTTTTGTAA

Protein sequence

MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLIIRAALKRLITVLKTTTVL

Homology

[Close]

BLAST of Csor.00g217840 vs. NCBI nr
Match: KAG6589688.1 (hypothetical protein SDJN03_15111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258 bits (658), Expect = 3.38e-86
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKL 60
           MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKL
Sbjct: 1   MVMDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKL 60

Query: 61  DEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLL 120
           DEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLL
Sbjct: 61  DEDEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLL 120

Query: 121 IIRAALKRLITVLKTTTVL 139
           IIRAALKRLITVLKTTTVL
Sbjct: 121 IIRAALKRLITVLKTTTVL 139

[Close]

BLAST of Csor.00g217840 vs. NCBI nr
Match: KAG7023367.1 (hypothetical protein SDJN02_14392, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253 bits (646), Expect = 9.95e-82
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 3   MDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDE 62
           MDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDE
Sbjct: 1   MDGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDE 60

Query: 63  DEEDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLII 122
           DE+DDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLII
Sbjct: 61  DEDDDDDDEEEEEIRRRKASQSSTTLKMHGIRQRWELFRVQALGEDRFSIQMFGYRLLII 120

Query: 123 RAALKRLITVLKTTTVL 139
           RAALKRLITVLKTTTVL
Sbjct: 121 RAALKRLITVLKTTTVL 137

[Close]

BLAST of Csor.00g217840 vs. NCBI nr
Match: XP_004146373.1 (proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa_019895 [Cucumis sativus])

HSP 1 Score: 124 bits (310), Expect = 3.31e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 135 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 194

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 195 EDDDDDDEEEEEIRRRKASQSS 215

[Close]

BLAST of Csor.00g217840 vs. NCBI nr
Match: TYK28575.1 (ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 3.35e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214

[Close]

BLAST of Csor.00g217840 vs. NCBI nr
Match: XP_008453553.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1 ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 3.35e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214

[Close]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match: A0A0A0LUQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 1.60e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 135 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 194

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 195 EDDDDDDEEEEEIRRRKASQSS 215

[Close]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match: A0A5D3DZ12 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002230 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 1.62e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214

[Close]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match: A0A5A7USS5 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005320 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 1.62e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214

[Close]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match: A0A1S3BWI7 (ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 1.62e-30
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG  DG+LT+SVSMFSSLPQPNS KLQEPKSNP SS SQPK+VV+FKPPVNSSL+KL E 
Sbjct: 134 DGDSDGNLTKSVSMFSSLPQPNSQKLQEPKSNPSSSLSQPKRVVLFKPPVNSSLMKLGE- 193

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           E+DDDDDEEEEEIRRRKASQSS
Sbjct: 194 EDDDDDDEEEEEIRRRKASQSS 214

[Close]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL
Match: A0A6J1KT25 (ubiquitin carboxyl-terminal hydrolase 36 OS=Cucurbita maxima OX=3661 GN=LOC111496165 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 5.99e-29
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 4   DGAGDGDLTESVSMFSSLPQPNSTKLQEPKSNPPSSESQPKKVVVFKPPVNSSLLKLDED 63
           DG GD +LTES SMFSSLPQPNS  LQ+ KSNP S+ESQPK+VV+FKPPVNSSLLKL ED
Sbjct: 134 DGDGDENLTESASMFSSLPQPNSQNLQKSKSNPSSTESQPKRVVLFKPPVNSSLLKLGED 193

Query: 64  EEDDDDDEEEEEIRRRKASQSS 85
           + DDDDDEEEEEIRRRKASQSS
Sbjct: 194 D-DDDDDEEEEEIRRRKASQSS 214

The following BLAST results are available for this feature:

BLAST of Csor.00g217840 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g217840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589688.1	3.38e-86	100.00	hypothetical protein SDJN03_15111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023367.1	9.95e-82	99.27	hypothetical protein SDJN02_14392, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004146373.1	3.31e-30	84.15	proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa...	[more]
TYK28575.1	3.35e-30	84.15	ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa]	[more]
XP_008453553.1	3.35e-30	84.15	PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1...	[more]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ8	1.60e-30	84.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1	[more]
A0A5D3DZ12	1.62e-30	84.15	Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7USS5	1.62e-30	84.15	Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BWI7	1.62e-30	84.15	ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234...	[more]
A0A6J1KT25	5.99e-29	81.71	ubiquitin carboxyl-terminal hydrolase 36 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of Csor.00g217840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g217840.m01	Csor.00g217840.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity