
Csor.00g216230 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACATCTGCTAGTGAAGGACCTTCTCCCCACCTGTGAGTACTTCCCCATTGTCAGTTCTTAGTCTTTGAATGCATATTTCATTCGTTTATCTGTTAAGATGGAAAAGTTTGAAGAATTATGCCTTTTGCCATTGAAGAGAGTTGTTGCATAACTCAAGATAAGGATTGACGATTTATTACATAGGGGGCATTGCATGAATGTGTTAGGGACACATACCTCCGTAATGGTATGATATTACCCATTTTGAGTATAAACTCTCATTGTATTACTTTTGGTTTTCCCAAAATGTCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCACGATCATCCTCTTAATTAATCAATGTGGGACTCCCTCGAACAAAATACACCATAGAGCCTCTTTTGAGGCCTACGAAGCCCTCAAATAACTTCTCCTTAATTGAGGTTCGACTTCTTCTCTAGAGCCCTTGACCAAAATACACCCTTTGTTCGACACTTGAGTTACTTTTGACTACACATTTGAGGCTCACAACTTTTTTGTTCGACACTCGAGGATTTTGTTGAAATGACTAAGTTAAGGGTATGACTTTGATACCATGTTAGGAACCACAAACCTCTACAATGGTATAATATTGCCTACTTTGAGCATAAGGTCTCATGCCAATAGAAATATATTTTTTACTTATAAACCCATGATCATTCTCTTAATTAGCAAATGTGAGACTCCCTCCCAACCATCGTCAACAGAAGAATTGAGTTATGCACTTGTGTAAAACAAAAATGGACATAACTCCTGCATCAAATTGTAGAACTTTTGCTATTTCTTGAGTGCCAAAAAGTATGTTATTTTTTATTTTCGTATAAAGATGATGTTGAGGCCAGATTCCTTAAATTTATCACTTGCAAGTCTTCTTCCAGTTTCATTCTCTACCATGCAGCTAGAGATTAGTTTTGGGGATTGTTGGAAGTCATTTTTTCATTCCTCATTATTAATATGTTCAGTTCTCTTCTTATTAACACATCCATATGTAGGATGATGGTATTCAGGTTTTTACTTGGGACTAATCACATGATTCTTGTAGCTAATTGCATCAAACGTGACCCGCTTTTTCAGGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTTCCCCAAAAGCATGAGCCAACAATGTTGATTGGTTGGAGAATGGGTCTAGCTTCAATCCTGTTGAAGAAACACAATTAGCTGAAGTCCACGATTACAAACATCTCGATTTCTGCGAGCCACGAAAATTTCTACAATTTGATTCTGCTCCTTCTAACAAGAAAAAAGCTCTGCTGCTCTGAGTTTTGTTCTGTTTGAGTTGGTTCTGATATTTAGAATGGCAGGACGAGCTGTTACATTGAGCCGGCGATCATTTTCATTTTCAGCTTCTGAAAAGTGGCGGCAGAACTGAACTGCGCCCTGTATTATGTTGGAGATTAGAACATGACTTGCAATCCTTAATTTCCTTCTAAATAATCCTCAAATCCATCAACATATGATGAATCAAGTTGTATGCTAACAAGTTAAGAAAAGTTTGAATTCTATTTTAGTCTCATTTTCCATATCTATTTCAACTCTAGCTTACTTTTAGTGGATTGGGTTTAAACATAGATCATTTTCAAGTTGAAATGTATATAGAAATTTCTAAGAATCAGGTAAATATAGATCATTGAATCATTGATGTTTAAAAGGGTAACTTTTAAGTTATCTATGGATGAGGTATTTATTCTGAAGTTGAAGATTTGGTATGATTTATTCTAAGGTTAGAAAATTTGGTCTCGAACTTTGAAAAATTGGCGAGGAAAACAAAACCAGCATGATTTGAATATCATAAACGAAGGTCCAAGTAGTAGATTAAATAAGAAATCACTGTGTGTTTGCTGCTGATAATGGTAACCCAGTGGGGAGTGGGGGCCAGAGCCACACATAAAGGGAGTATAAACCACCAACAAAAATCCACCACTTGAACTATCCATATTACCCCCAGGGAGGAATTCATTACTCCATATCGATACCCATCTCTTTTCTTTTCTGATTTCTGAGTTTCTAGGAAACCCACCCATTTTCTTTTATGGTATTTGGTTGATTCTCACTTCCACTCGAGTTTTCCCTTTTTCTCTCATCTAACTTTCAGTTCTCTTGGCCCCAAAGTCCACTCTATCCCTTTCCAGTTTGCTGGGTTTTGGGTTCCCATTGGTTTTTACCTGAATCGATGCCCTTCTCTGCGCTTTCGGCTCATCATCAACATGGTCATGCTGAATAGTTCCTTCGCCGCGTGGATCAGCCGCTTGTTCGCTTGCATGGGGTAAGTTCTTTATCTTCCTCACCTATCATTCAATGCAGTTTTGGAAAGGACTTGTATGTAATCCTTGATCCTAATGGAGTTCTGTGATGCCCCTTTTGTGTATCCCTTGTGAATGATTCTGTTTTTTGACTTACTGAGCAGTACACAGTTTTCTTTGGGCATCTTTGATTAGTATGAAAGAATTTTGATTACTTATTGGTTTTACAGAGCTTGTTGAGTATTCAACTTTGATTGTGTATATTCCAAGTTGTGCGGAAATGGGGCCAATAATATGAACTAGTTCATTTCTTGTTTGTTTTCTGGGCGAAGAAAGTGAAAAGCCAAGTCTTATTCCTTTATGAGGTTGCCCTAACAACTTTATCGCCGATGAAAAGGGTCAAATACTAAAGAACCCATTATCATCCATCATAGATTATTATAGCTTTTGTTCATTTACGAGGAGGAAGTAGCTCTAAGATGGCTAAGTATTACTTTTTGAACGTATTTCTTTTGCTTTCATATTGCATTACCCTTGTGCTGTGTGAATCCGTGGAGTTGTCAAGAGGGTATTAGCCGCCTAATACTTGTCTGTTGTAGACTGTAGTCTTAAGATTATAGTTTTCTTGTGCTGATTTAGTAAAAAGAATTGATATTAAGGTGGATCCTTGAAAAAATGAAACTAAATTCACTAATAGTCGAAGTTTATGCTTGGAAGTATGAAACCCCCACACTTCTCTTAGTTCTGTAGAAGCTGAATTTTGATTCTGAATTGTAGTTGAGATGTTTAATTGCTGCACAATCATTCCCAGTTTCCCTTAGGCTCTTCTTTCGTTTTTCGCCCTGTTTAAATGGTGCTATTGCTTACAACTTCATTAGTAGATGCGTAATCATTGTTGTTGTAATAGCCCAAATCCATCTCTGGCAGATATTGTCCTCTTTAGACTTTCCCTCCCGGGCTTCCCCTCAAGGTTTTAGAACGCATCCACTAGAGAGAGGTTTTCACACCCTTATAACTGAAGTGGGAATGTCGTAGTTGTCATCCAATCTATGGTGTACTATAATATTCAGTTTACCATGGTTTTTAACGTACACGTTCCTTTTTCGGAAGTGTTCTGCTTGTGTTCATGGTGACATCCATTCAATTCATCATGAGAACTCGAGCAATTTAGGATTAATCAATGATCACTCTACATTCAATTTAGAACGTGCGTTCACATAATTCCTATTGTTAATAGCTGTGTGTGTGCATCTAACCATAAATGAAATATTTGACAACTGCCTTGCATTATTGATGAATGGTGCACATGCTATGTTTTTGCTGCAATTTTATAGCATATACTGCTTTATTAGGTTTATAACAGTGCAGGGGTTGTTTTGGATGCTGCACTAAGCCCACACCTATTATTGCTGTGGATGAGCCATCTAAGGGATTAAGAATTCAAGGACGAGTAGTCAAGAAACCGAGCATATCCGATGGTTTTTGGAGCACAAGCACGTGTGATTTGGATAACAGCACCATTCAGTCTCAACGAAGCATCTCGTCTATCAGTACATCAAACCTCACACACAGTCAAAGCAATGTTGGTGGCAGTGTGAGCAACCCTTCTGAATATGTAAACCATGGCAAGTTTCCCTCTTTCTCATCTGATCTTTGTTGAAGTCGTGGGTAACATTCGAGATTGTTAACTGCATTTAACAAGCTATCGTTTCTTCATTATAACCTAGTCAATATAGAGACGAGCAATCTACTTATCTTCATTGCTTTCAGGTTTGCTTCTCTGGAACCAGACTAGGTTGCAGTGGATTGGAAGTAGTAATACAAACACAACGGATGAAACTCAAGAACGACAGAAGGCAAAAATCAGGTCAGTTTACGAGCTTCGTGTGCCTTTGTAAATAGTAGGTATCATAGAGGTATGAAAGGTGTATTAATCATCATACTGTGCGTATACGTATGCTTTTGTATGCAGCTGGCGTGCAACATATGACAGTTTACTGGGTACGAGACAGCCTTTTCCCCATCGAATTCCTTTGTCGGTAAGTTCGCTGTTGAAGTTTTGTCATTTCGTTCTCCAATCACTGTTCGATCTACAAATAAGAGATTCAAAATCTTGGTTTGGACAGGAAATGGTGAACTTTCTTGTTGAAGTATGGGAACAAGAGGGCCTATATGATTGA ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACATCTGCTAGTGAAGGACCTTCTCCCCACCTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGTCCACTCTATCCCTTTCCAGTTTGCTGGGTTTTGGGTTCCCATTGGTTTTTACCTGAATCGATGCCCTTCTCTGCGCTTTCGGCTCATCATCAACATGGTCATGCTGAATAGTTCCTTCGCCGCGTGGATCAGCCGCTTGTTCGCTTGCATGGGGGGTTGTTTTGGATGCTGCACTAAGCCCACACCTATTATTGCTGTGGATGAGCCATCTAAGGGATTAAGAATTCAAGGACGAGTAGTCAAGAAACCGAGCATATCCGATGGTTTTTGGAGCACAAGCACGTGTGATTTGGATAACAGCACCATTCAGTCTCAACGAAGCATCTCGTCTATCAGTACATCAAACCTCACACACAGTCAAAGCAATGTTGGTGGCAGTGTGAGCAACCCTTCTGAATATGTAAACCATGGTTTGCTTCTCTGGAACCAGACTAGGTTGCAGTGGATTGGAAGTAGTAATACAAACACAACGGATGAAACTCAAGAACGACAGAAGGCAAAAATCAGCTGGCGTGCAACATATGACAGTTTACTGGGTACGAGACAGCCTTTTCCCCATCGAATTCCTTTGTCGGAAATGGTGAACTTTCTTGTTGAAGTATGGGAACAAGAGGGCCTATATGATTGA ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACATCTGCTAGTGAAGGACCTTCTCCCCACCTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGTCCACTCTATCCCTTTCCAGTTTGCTGGGTTTTGGGTTCCCATTGGTTTTTACCTGAATCGATGCCCTTCTCTGCGCTTTCGGCTCATCATCAACATGGTCATGCTGAATAGTTCCTTCGCCGCGTGGATCAGCCGCTTGTTCGCTTGCATGGGGGGTTGTTTTGGATGCTGCACTAAGCCCACACCTATTATTGCTGTGGATGAGCCATCTAAGGGATTAAGAATTCAAGGACGAGTAGTCAAGAAACCGAGCATATCCGATGGTTTTTGGAGCACAAGCACGTGTGATTTGGATAACAGCACCATTCAGTCTCAACGAAGCATCTCGTCTATCAGTACATCAAACCTCACACACAGTCAAAGCAATGTTGGTGGCAGTGTGAGCAACCCTTCTGAATATGTAAACCATGGTTTGCTTCTCTGGAACCAGACTAGGTTGCAGTGGATTGGAAGTAGTAATACAAACACAACGGATGAAACTCAAGAACGACAGAAGGCAAAAATCAGCTGGCGTGCAACATATGACAGTTTACTGGGTACGAGACAGCCTTTTCCCCATCGAATTCCTTTGTCGGAAATGGTGAACTTTCTTGTTGAAGTATGGGAACAAGAGGGCCTATATGATTGA MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQEILPSHSSRTVHSIPFQFAGFWVPIGFYLNRCPSLRFRLIINMVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKPSISDGFWSTSTCDLDNSTIQSQRSISSISTSNLTHSQSNVGGSVSNPSEYVNHGLLLWNQTRLQWIGSSNTNTTDETQERQKAKISWRATYDSLLGTRQPFPHRIPLSEMVNFLVEVWEQEGLYD Homology
BLAST of Csor.00g216230 vs. ExPASy Swiss-Prot
Match: P73300 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpmJ PE=3 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 6.5e-10 Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.5e-09 Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy Swiss-Prot
Match: B2G8V5 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 GN=rpmJ PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.5e-09 Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 3.2e-09 Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 3.2e-09 Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0
BLAST of Csor.00g216230 vs. NCBI nr
Match: KAG6589849.1 (hypothetical protein SDJN03_15272, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 568 bits (1463), Expect = 2.51e-204 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of Csor.00g216230 vs. NCBI nr
Match: KAG6587898.1 (hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 441 bits (1133), Expect = 1.33e-150 Identity = 228/282 (80.85%), Postives = 245/282 (86.88%), Query Frame = 0
BLAST of Csor.00g216230 vs. NCBI nr
Match: KAG7023519.1 (hypothetical protein SDJN02_14545, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 400 bits (1027), Expect = 5.51e-139 Identity = 198/209 (94.74%), Postives = 198/209 (94.74%), Query Frame = 0
BLAST of Csor.00g216230 vs. NCBI nr
Match: XP_023516635.1 (uncharacterized protein LOC111780448 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 362 bits (930), Expect = 1.08e-124 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
BLAST of Csor.00g216230 vs. NCBI nr
Match: XP_022961227.1 (uncharacterized protein LOC111461800 [Cucurbita moschata]) HSP 1 Score: 360 bits (924), Expect = 8.89e-124 Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy TrEMBL
Match: A0A6J1H9M2 (uncharacterized protein LOC111461800 OS=Cucurbita moschata OX=3662 GN=LOC111461800 PE=4 SV=1) HSP 1 Score: 360 bits (924), Expect = 4.30e-124 Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy TrEMBL
Match: A0A6J1JKP7 (uncharacterized protein LOC111485294 OS=Cucurbita maxima OX=3661 GN=LOC111485294 PE=4 SV=1) HSP 1 Score: 355 bits (912), Expect = 2.89e-122 Identity = 174/177 (98.31%), Postives = 175/177 (98.87%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy TrEMBL
Match: A0A6J1CTQ5 (uncharacterized protein LOC111014486 OS=Momordica charantia OX=3673 GN=LOC111014486 PE=4 SV=1) HSP 1 Score: 351 bits (901), Expect = 1.99e-119 Identity = 174/198 (87.88%), Postives = 184/198 (92.93%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy TrEMBL
Match: A0A6J1I744 (uncharacterized protein LOC111470604 OS=Cucurbita maxima OX=3661 GN=LOC111470604 PE=4 SV=1) HSP 1 Score: 340 bits (873), Expect = 3.35e-115 Identity = 179/229 (78.17%), Postives = 191/229 (83.41%), Query Frame = 0
BLAST of Csor.00g216230 vs. ExPASy TrEMBL
Match: A0A5D3C7W3 (DUF4050 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001290 PE=4 SV=1) HSP 1 Score: 332 bits (850), Expect = 7.94e-113 Identity = 162/177 (91.53%), Postives = 167/177 (94.35%), Query Frame = 0
BLAST of Csor.00g216230 vs. TAIR 10
Match: AT5G25360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 219.2 bits (557), Expect = 4.3e-57 Identity = 107/174 (61.49%), Postives = 132/174 (75.86%), Query Frame = 0
BLAST of Csor.00g216230 vs. TAIR 10
Match: AT5G25360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). ) HSP 1 Score: 219.2 bits (557), Expect = 4.3e-57 Identity = 107/174 (61.49%), Postives = 132/174 (75.86%), Query Frame = 0
BLAST of Csor.00g216230 vs. TAIR 10
Match: AT1G15350.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 147.9 bits (372), Expect = 1.2e-35 Identity = 82/162 (50.62%), Postives = 102/162 (62.96%), Query Frame = 0
BLAST of Csor.00g216230 vs. TAIR 10
Match: AT1G15350.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 147.9 bits (372), Expect = 1.2e-35 Identity = 82/162 (50.62%), Postives = 102/162 (62.96%), Query Frame = 0
BLAST of Csor.00g216230 vs. TAIR 10
Match: AT4G32342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 147.5 bits (371), Expect = 1.6e-35 Identity = 83/158 (52.53%), Postives = 102/158 (64.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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