Csor.00g210650 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g210650
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTransmembrane protein, putative
LocationCsor_Chr20: 6954164 .. 6954547 (-)
RNA-Seq ExpressionCsor.00g210650
SyntenyCsor.00g210650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACAAAATAATATCGAAGAAACAGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTTCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACAAGGAAATCCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCAACCACAACCAGATTCGGAACTCTAG

mRNA sequence

ATGATGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACAAAATAATATCGAAGAAACAGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTTCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACAAGGAAATCCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCAACCACAACCAGATTCGGAACTCTAG

Coding sequence (CDS)

ATGATGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGAGGAAGCACAAAATAATATCGAAGAAACAGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTTCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACAAGGAAATCCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGGAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCAACCACAACCAGATTCGGAACTCTAG

Protein sequence

MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQPQPDSEL
Homology
BLAST of Csor.00g210650 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (639), Expect = 1.09e-83
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120
           VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ
Sbjct: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

BLAST of Csor.00g210650 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 1.28e-82
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKAD+EAQNNIEETVGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120
           VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMV+DSAKAAAQTLQ
Sbjct: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

BLAST of Csor.00g210650 vs. NCBI nr
Match: KAG6571256.1 (hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (628), Expect = 5.20e-82
Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0

Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120
           VVNRAVTCLFP KIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKA+AQTLQ
Sbjct: 61  VVNRAVTCLFPQKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKASAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

BLAST of Csor.00g210650 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (622), Expect = 4.28e-81
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0

Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEE VGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEEIVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120
           VVNRAVTCLFPPKIDFR GNPVEDGQVNGNENMKESITKSFHTTKQMVEDSA AAAQTLQ
Sbjct: 61  VVNRAVTCLFPPKIDFRPGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSANAAAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

BLAST of Csor.00g210650 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 209 bits (531), Expect = 1.98e-67
Identity = 107/113 (94.69%), Postives = 109/113 (96.46%), Query Frame = 0

Query: 15  MVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLFPPKI 74
           MV+VVGVGKADEEA NNIEETVGRVISASAASSP PPNSYWEEVRKVVNRAVTCLFPPKI
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASSP-PPNSYWEEVRKVVNRAVTCLFPPKI 60

Query: 75  DFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQPQPDSEL 127
           DFR G PVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTL+PQPDSEL
Sbjct: 61  DFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL 112

BLAST of Csor.00g210650 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 9.59e-68
Identity = 107/113 (94.69%), Postives = 109/113 (96.46%), Query Frame = 0

Query: 15  MVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLFPPKI 74
           MV+VVGVGKADEEA NNIEETVGRVISASAASSP PPNSYWEEVRKVVNRAVTCLFPPKI
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASSP-PPNSYWEEVRKVVNRAVTCLFPPKI 60

Query: 75  DFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQPQPDSEL 127
           DFR G PVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTL+PQPDSEL
Sbjct: 61  DFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL 112

BLAST of Csor.00g210650 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.54e-37
Identity = 80/131 (61.07%), Postives = 94/131 (71.76%), Query Frame = 0

Query: 3   KKGGFVL-VLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKV 62
           KK   VL +L+L ++V+VG+ KA+EEA NNI          S  S+P+PPNSYWEEVRKV
Sbjct: 6   KKVKLVLRMLLLLLLVLVGIVKANEEAANNIY---------SETSTPNPPNSYWEEVRKV 65

Query: 63  VNRAVTCLFPPKIDFRQGNPVEDGQ----VNGNENMKESITKSFHTTKQMVEDSAKAAAQ 122
           VN+A T LFPPKIDFR G  VED       NGN N+KE++TKSF  TK+MVEDSAKAAAQ
Sbjct: 66  VNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQ 125

Query: 123 TLQ-PQPDSEL 127
           TLQ P P SEL
Sbjct: 126 TLQKPPPHSEL 127

BLAST of Csor.00g210650 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.68e-33
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 11  LVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLF 70
           L+L ++++VG+  A++EA NN+          S  S+P+PPNSYWEEVRKVVN+A + LF
Sbjct: 16  LLLLLLILVGIAMANDEAANNVY---------SETSTPNPPNSYWEEVRKVVNKAYSYLF 75

Query: 71  PPKIDFRQGNPVED--GQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ-PQPDSEL 127
           PPKIDFR G  VED  G    + N+KE++TKSF  TK+MVEDSAKAAAQTLQ P P SEL
Sbjct: 76  PPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 126

BLAST of Csor.00g210650 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.68e-33
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 11  LVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLF 70
           L+L ++++VG+  A++EA NN+          S  S+P+PPNSYWEEVRKVVN+A + LF
Sbjct: 16  LLLLLLILVGIAMANDEAANNVY---------SETSTPNPPNSYWEEVRKVVNKAYSYLF 75

Query: 71  PPKIDFRQGNPVED--GQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ-PQPDSEL 127
           PPKIDFR G  VED  G    + N+KE++TKSF  TK+MVEDSAKAAAQTLQ P P SEL
Sbjct: 76  PPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPPPHSEL 126

BLAST of Csor.00g210650 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.18e-15
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 0

Query: 32  IEETVGRVISASAASSPSPPNS---YWEEVRK-VVNRAVTCLFPPKIDFRQG--NPVEDG 91
           +EE +   IS    +S +PP +   YW+ +R  V++  +  LFPPKIDFR G  +  EDG
Sbjct: 58  VEEALVDAISVFTVTSAAPPCATPHYWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDG 117

Query: 92  QVNGNENMKESITKSFHTTKQMVEDSAKAAA 116
             +GNEN+KE++TKSF   KQ+V+DSAKAAA
Sbjct: 118 GGHGNENVKEALTKSFDQGKQIVQDSAKAAA 148

BLAST of Csor.00g210650 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-07
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 53  SYWEEVRKVVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSA 112
           +YW +VR+ ++R  +  FPP   F   N   D  +   ENMKE+ T+SF  +K  VE++A
Sbjct: 60  NYWAKVRETLDRGQSHFFPPNTYFTGKN---DAPMGAGENMKEAATRSFEHSKATVEEAA 119

Query: 113 KAAAQTL 120
           ++AA+ +
Sbjct: 120 RSAAEVV 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571257.11.09e-83100.00hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571255.11.28e-8298.43hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571256.15.20e-8298.43hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571254.14.28e-8197.64hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022948557.11.98e-6794.69uncharacterized protein LOC111452199 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1G9K39.59e-6894.69uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC1114521... [more]
A0A0A0L9041.54e-3761.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1[more]
A0A5A7VE772.68e-3357.50Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CDE02.68e-3357.50uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=... [more]
A0A6J1D2A45.18e-1548.35uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
AT1G16850.17.0e-0737.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..127
NoneNo IPR availablePANTHERPTHR35463TRANSMEMBRANE PROTEINcoord: 8..120
NoneNo IPR availablePANTHERPTHR35463:SF11BNAC05G12860D PROTEINcoord: 8..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g210650.m01Csor.00g210650.m01mRNA