Csor.00g205940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g205940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 3517591 .. 3517905 (-)
RNA-Seq Expression	Csor.00g205940
Synteny	Csor.00g205940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTCATGTACACTCCATTGCATGACTGCAATCCGCCCCCTCGAGGCTATACATATAAACTGCATGTCGGCATTCTGTCTATGAGGCGGTACATGTACATTGCATGCACTACATGCAGGCTGTACATGTATACTGCAGGGTTGCAATCTGTTGTTGAAGGCTGTATAGATACACTACAGGGTTGCAATCTATCGTTGAAGGTTGTACAGGTACACTGCAGGGTTGCAATCTGTCGTCGAACGCTGTACATGTACACTGCAGGGCTGCAATTCGACCTTGAACTTATACATGCATGTTGCAATCTTTCTTGA

mRNA sequence

ATGGTTGTCATGTACACTCCATTGCATGACTGCAATCCGCCCCCTCGAGGCTATACATATAAACTGCATGTCGGCATTCTGTCTATGAGGCGGTACATGTACATTGCATGCACTACATGCAGGCTGTACATGTATACTGCAGGGTTGCAATCTGTTGTTGAAGGCTGTATAGATACACTACAGGGTTGCAATCTATCGTTGAAGGTTGTACAGGTACACTGCAGGGTTGCAATCTGTCGTCGAACGCTGTACATGTACACTGCAGGGCTGCAATTCGACCTTGAACTTATACATGCATGTTGCAATCTTTCTTGA

Coding sequence (CDS)

ATGGTTGTCATGTACACTCCATTGCATGACTGCAATCCGCCCCCTCGAGGCTATACATATAAACTGCATGTCGGCATTCTGTCTATGAGGCGGTACATGTACATTGCATGCACTACATGCAGGCTGTACATGTATACTGCAGGGTTGCAATCTGTTGTTGAAGGCTGTATAGATACACTACAGGGTTGCAATCTATCGTTGAAGGTTGTACAGGTACACTGCAGGGTTGCAATCTGTCGTCGAACGCTGTACATGTACACTGCAGGGCTGCAATTCGACCTTGAACTTATACATGCATGTTGCAATCTTTCTTGA

Protein sequence

MVVMYTPLHDCNPPPRGYTYKLHVGILSMRRYMYIACTTCRLYMYTAGLQSVVEGCIDTLQGCNLSLKVVQVHCRVAICRRTLYMYTAGLQFDLELIHACCNLS

Homology

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BLAST of Csor.00g205940 vs. NCBI nr
Match: KAG6596761.1 (hypothetical protein SDJN03_09941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222 bits (565), Expect = 3.87e-73
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MVVMYTPLHDCNPPPRGYTYKLHVGILSMRRYMYIACTTCRLYMYTAGLQSVVEGCIDTL 60
           MVVMYTPLHDCNPPPRGYTYKLHVGILSMRRYMYIACTTCRLYMYTAGLQSVVEGCIDTL
Sbjct: 1   MVVMYTPLHDCNPPPRGYTYKLHVGILSMRRYMYIACTTCRLYMYTAGLQSVVEGCIDTL 60

Query: 61  QGCNLSLKVVQVHCRVAICRRTLYMYTAGLQFDLELIHACCNLS 104
           QGCNLSLKVVQVHCRVAICRRTLYMYTAGLQFDLELIHACCNLS
Sbjct: 61  QGCNLSLKVVQVHCRVAICRRTLYMYTAGLQFDLELIHACCNLS 104

The following BLAST results are available for this feature:

BLAST of Csor.00g205940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g205940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596761.1	3.87e-73	100.00	hypothetical protein SDJN03_09941, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g205940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g205940 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g205940.m01	Csor.00g205940.m01	mRNA