Csor.00g191130 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g191130
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 9409508 .. 9409981 (-)
RNA-Seq Expression	Csor.00g191130
Synteny	Csor.00g191130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACAGTAAAGAACGAAAATCATCGCTGGATTCAAACGATTTCGGTAACTGTAAAGCCGAATGATAATCGCAAGAAGCAAAACCTTGACGGAAAGAACAATCGGCTCTACGATTCTTCGATTCTTAGATTCTTCAGGATGTTTTTGCTTCTTGATCTTGATCGGAAGGCAGAGTACGGCAGCAAAGTGGAGGAGGCTTGGGAGCGGCAAGGAGGTGAGAGGACCGAGATCGAAGGCGAAGAGGAGGAGTTTGAAGTTTCCGAGCCAAGCGAGGAAGAAGGCAGTCGGACCGCCGAAATGGAAGGAGTGGAGATTCAGAGGAAGGAGGAGGAAGACGAAGAGGACGGGGAAGAGAGAGAGGAGCCGGGGAAGTCCCTTAGGGATTTTGGAAGCTACATAGTAAGAATAGCAAATGAGAGCAATGGCAATGGACCATACCTGGAGGAGGCTGGAGAGTTCGCCGTCCATTAG

mRNA sequence

ATGGAGACAGTAAAGAACGAAAATCATCGCTGGATTCAAACGATTTCGGTAACTGTAAAGCCGAATGATAATCGCAAGAAGCAAAACCTTGACGGAAAGAACAATCGGCTCTACGATTCTTCGATTCTTAGATTCTTCAGGATGTTTTTGCTTCTTGATCTTGATCGGAAGGCAGAGTACGGCAGCAAAGTGGAGGAGGCTTGGGAGCGGCAAGGAGGTGAGAGGACCGAGATCGAAGGCGAAGAGGAGGAGTTTGAAGTTTCCGAGCCAAGCGAGGAAGAAGGCAGTCGGACCGCCGAAATGGAAGGAGTGGAGATTCAGAGGAAGGAGGAGGAAGACGAAGAGGACGGGGAAGAGAGAGAGGAGCCGGGGAAGTCCCTTAGGGATTTTGGAAGCTACATAGTAAGAATAGCAAATGAGAGCAATGGCAATGGACCATACCTGGAGGAGGCTGGAGAGTTCGCCGTCCATTAG

Coding sequence (CDS)

ATGGAGACAGTAAAGAACGAAAATCATCGCTGGATTCAAACGATTTCGGTAACTGTAAAGCCGAATGATAATCGCAAGAAGCAAAACCTTGACGGAAAGAACAATCGGCTCTACGATTCTTCGATTCTTAGATTCTTCAGGATGTTTTTGCTTCTTGATCTTGATCGGAAGGCAGAGTACGGCAGCAAAGTGGAGGAGGCTTGGGAGCGGCAAGGAGGTGAGAGGACCGAGATCGAAGGCGAAGAGGAGGAGTTTGAAGTTTCCGAGCCAAGCGAGGAAGAAGGCAGTCGGACCGCCGAAATGGAAGGAGTGGAGATTCAGAGGAAGGAGGAGGAAGACGAAGAGGACGGGGAAGAGAGAGAGGAGCCGGGGAAGTCCCTTAGGGATTTTGGAAGCTACATAGTAAGAATAGCAAATGAGAGCAATGGCAATGGACCATACCTGGAGGAGGCTGGAGAGTTCGCCGTCCATTAG

Protein sequence

METVKNENHRWIQTISVTVKPNDNRKKQNLDGKNNRLYDSSILRFFRMFLLLDLDRKAEYGSKVEEAWERQGGERTEIEGEEEEFEVSEPSEEEGSRTAEMEGVEIQRKEEEDEEDGEEREEPGKSLRDFGSYIVRIANESNGNGPYLEEAGEFAVH

Homology

[Close]

BLAST of Csor.00g191130 vs. NCBI nr
Match: KAG6607776.1 (hypothetical protein SDJN03_01118, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302 bits (774), Expect = 2.66e-103
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   METVKNENHRWIQTISVTVKPNDNRKKQNLDGKNNRLYDSSILRFFRMFLLLDLDRKAEY 60
           METVKNENHRWIQTISVTVKPNDNRKKQNLDGKNNRLYDSSILRFFRMFLLLDLDRKAEY
Sbjct: 1   METVKNENHRWIQTISVTVKPNDNRKKQNLDGKNNRLYDSSILRFFRMFLLLDLDRKAEY 60

Query: 61  GSKVEEAWERQGGERTEIEGEEEEFEVSEPSEEEGSRTAEMEGVEIQRKEEEDEEDGEER 120
           GSKVEEAWERQGGERTEIEGEEEEFEVSEPSEEEGSRTAEMEGVEIQRKEEEDEEDGEER
Sbjct: 61  GSKVEEAWERQGGERTEIEGEEEEFEVSEPSEEEGSRTAEMEGVEIQRKEEEDEEDGEER 120

Query: 121 EEPGKSLRDFGSYIVRIANESNGNGPYLEEAGEFAVH 157
           EEPGKSLRDFGSYIVRIANESNGNGPYLEEAGEFAVH
Sbjct: 121 EEPGKSLRDFGSYIVRIANESNGNGPYLEEAGEFAVH 157

[Close]

BLAST of Csor.00g191130 vs. NCBI nr
Match: KAF7840556.1 (Acyl-CoA--sterol O-acyltransferase 1 [Senna tora])

HSP 1 Score: 53.1 bits (126), Expect = 3.24e-05
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 1   METVKNENHRWIQTISVTVKPNDNRKKQNLDG-------KNNRLYDSSILRFFRMFLLLD 60
           ME ++NE    ++ ++V V+     K  NLD        +  RL   SIL F   ++  D
Sbjct: 1   MEAIENEKKLGVEIVAVLVRFQHQGKNHNLDAVIEQRLVRIQRL-GMSILEFVVGWIFED 60

Query: 61  LDRKAEYGSKVEEAWERQGG--ERTEIEGEEEEFEVSEPSEEEGSRTAEMEGVEIQRKEE 120
            D   E G    EA+E +G   ER   E EE+E EVSEPS+EEG  T+EM  V+I+RK +
Sbjct: 61  FD--GERGES-NEAFEGEGRVRERAMAESEEQELEVSEPSDEEGESTSEMNRVKIERKTK 120

Query: 121 EDEEDGEEREEPGKSL 127
           ++  D ++REE  K  
Sbjct: 121 KEVNDRQKREESKKGF 132

The following BLAST results are available for this feature:

BLAST of Csor.00g191130 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g191130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607776.1	2.66e-103	100.00	hypothetical protein SDJN03_01118, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF7840556.1	3.24e-05	37.50	Acyl-CoA--sterol O-acyltransferase 1 [Senna tora]	[more]

BLAST of Csor.00g191130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g191130 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g191130.m01	Csor.00g191130.m01	mRNA