Csor.00g178380 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g178380
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 3139178 .. 3139544 (-)
RNA-Seq ExpressionCsor.00g178380
SyntenyCsor.00g178380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGTTGCTGCAAGGCAGAGGCGTGTTAGGGAAGGGCGGAGTAGGGCGTCAGGTATGAGAATTGCCATTATTATTGTACTGCGTCGTTGGCCCACATCGTTTTTCCGACAGACTGAACGGCTGACGCAGAGTTGCCGCCTTTTCTTTTTCCTTATCGTTATAATATGGTTTGCGTAATTTTGCAGTCAGCAGGCACTCGCCCAACGCCGATAAGGACCGGCTTGGCTGCGTATAAATACAATACTGATGTCGAAACTTCGATACAATTCTCCCTTGCGTCTCCACGACCACTAACTGATCCTATTTTCGTATATCTAGTGATGCGCATGCAATCAAGGGAACTTGAAGTGGCAGACACGTAA

mRNA sequence

ATGGCGAAGTTGCTGCAAGGCAGAGGCGTGTTAGGGAAGGGCGGAGTAGGGCGTCAGTCAGCAGGCACTCGCCCAACGCCGATAAGGACCGGCTTGGCTGCGTATAAATACAATACTGATGTCGAAACTTCGATACAATTCTCCCTTGCGTCTCCACGACCACTAACTGATCCTATTTTCGTATATCTAGTGATGCGCATGCAATCAAGGGAACTTGAAGTGGCAGACACGTAA

Coding sequence (CDS)

ATGGCGAAGTTGCTGCAAGGCAGAGGCGTGTTAGGGAAGGGCGGAGTAGGGCGTCAGTCAGCAGGCACTCGCCCAACGCCGATAAGGACCGGCTTGGCTGCGTATAAATACAATACTGATGTCGAAACTTCGATACAATTCTCCCTTGCGTCTCCACGACCACTAACTGATCCTATTTTCGTATATCTAGTGATGCGCATGCAATCAAGGGAACTTGAAGTGGCAGACACGTAA

Protein sequence

MAKLLQGRGVLGKGGVGRQSAGTRPTPIRTGLAAYKYNTDVETSIQFSLASPRPLTDPIFVYLVMRMQSRELEVADT
Homology
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BLAST of Csor.00g178380 vs. NCBI nr
Match: KAG6591740.1 (hypothetical protein SDJN03_14086, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151 bits (381), Expect = 6.57e-46
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MAKLLQGRGVLGKGGVGRQSAGTRPTPIRTGLAAYKYNTDVETSIQFSLASPRPLTDPIF 60
          MAKLLQGRGVLGKGGVGRQSAGTRPTPIRTGLAAYKYNTDVETSIQFSLASPRPLTDPIF
Sbjct: 1  MAKLLQGRGVLGKGGVGRQSAGTRPTPIRTGLAAYKYNTDVETSIQFSLASPRPLTDPIF 60

Query: 61 VYLVMRMQSRELEVADT 77
          VYLVMRMQSRELEVADT
Sbjct: 61 VYLVMRMQSRELEVADT 77

The following BLAST results are available for this feature:
BLAST of Csor.00g178380 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g178380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591740.16.57e-46100.00hypothetical protein SDJN03_14086, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g178380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g178380 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g178380.m01Csor.00g178380.m01mRNA