Csor.00g155580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g155580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr03: 480985 .. 481530 (+)
RNA-Seq Expression	Csor.00g155580
Synteny	Csor.00g155580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTCTCTCCTTCGCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTGTGCTATAAACCCATTTTTCACGGCTTCAATCGCCACCATTTTTCTCCTCAAATGGAGTTCTTCTCATGAACTTCCCCTTTCGAGCTTGTTTTTCAGCGTTGTCTGTGTCCGATGGGTCTGTGAGAGTTCGTGCTGTTCTACGTACTGTGGCTCTGGATCTTCGAATGTGCGAGGTTGGTCTTGCTGTTTTGAAACGATTTGCTTCGATTTCGAATTTAAACCCTACCCCCTAACTTTGTAGTTTCCGCCGTGTTGAAGATCATACCGATTTAATTGACTTTTTTCCCCCATTTCACACTTACTGGCCTTGATTTGAATATATATGATCGTTTGTTGTCTGTTTTCGTGTTTTTTAATTGCGTTTTGTTGTTGGGTGTGGGTAGATGAACGAACTCCCTCGGGAAGATCAATGCTGCATTTGAATATTTCGATTCTTTTGAAGTTGGATGAAGTGTTTAGCTATAACTCTAGACCTCTCTGA

mRNA sequence

ATGCCTCTCTCTCCTTCGCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTGTGCTATAAACCCATTTTTCACGGCTTCAATCGCCACCATTTTTCTCCTCAAATGGAGTTCTTCTCATGAACTTCCCCTTTCGAGCTTGTTTTTCAGCGTTGTCTGTGTCCGATGGGTCTGTGAGAGTTCGTGCTGTTCTACGTACTGTGGCTCTGGATCTTCGAATGTGCGAGATGAACGAACTCCCTCGGGAAGATCAATGCTGCATTTGAATATTTCGATTCTTTTGAAGTTGGATGAAGTGTTTAGCTATAACTCTAGACCTCTCTGA

Coding sequence (CDS)

ATGCCTCTCTCTCCTTCGCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTGTGCTATAAACCCATTTTTCACGGCTTCAATCGCCACCATTTTTCTCCTCAAATGGAGTTCTTCTCATGAACTTCCCCTTTCGAGCTTGTTTTTCAGCGTTGTCTGTGTCCGATGGGTCTGTGAGAGTTCGTGCTGTTCTACGTACTGTGGCTCTGGATCTTCGAATGTGCGAGATGAACGAACTCCCTCGGGAAGATCAATGCTGCATTTGAATATTTCGATTCTTTTGAAGTTGGATGAAGTGTTTAGCTATAACTCTAGACCTCTCTGA

Protein sequence

MPLSPSPSPSSSSSSSSSSSLCAINPFFTASIATIFLLKWSSSHELPLSSLFFSVVCVRWVCESSCCSTYCGSGSSNVRDERTPSGRSMLHLNISILLKLDEVFSYNSRPL

Homology

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BLAST of Csor.00g155580 vs. NCBI nr
Match: KAG7033504.1 (hypothetical protein SDJN02_03226, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210 bits (534), Expect = 3.48e-68
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MPLSPSPSPSSSSSSSSSSSLCAINPFFTASIATIFLLKWSSSHELPLSSLFFSVVCVRW 60
           MPLSPSPSPSSSSSSSSSSSLCAINPFFTASIATIFLLKWSSS ELPLSSLFFSVVCVRW
Sbjct: 1   MPLSPSPSPSSSSSSSSSSSLCAINPFFTASIATIFLLKWSSSDELPLSSLFFSVVCVRW 60

Query: 61  VCESSCCSTYCGSGSSNVRDERTPSGRSMLHLNISILLKLDEVFSYNSRPL 111
           VCESSCCSTYCGSGSSNVRDERTPSGRSMLHLNISILLKLDEVFSYNSRPL
Sbjct: 61  VCESSCCSTYCGSGSSNVRDERTPSGRSMLHLNISILLKLDEVFSYNSRPL 111

The following BLAST results are available for this feature:

BLAST of Csor.00g155580 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g155580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033504.1	3.48e-68	99.10	hypothetical protein SDJN02_03226, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g155580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g155580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g155580.m01	Csor.00g155580.m01	mRNA