Csor.00g146660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g146660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	phytoene synthase 2, chloroplastic-like
Location	Csor_Chr20: 174516 .. 175164 (+)
RNA-Seq Expression	Csor.00g146660
Synteny	Csor.00g146660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCTTCTATTTCCCTTGCGCTAAACCCTCGTATAGTCATTGGAGAATGCGAAGGGAAGCGATCCAGAGTTAGAGTTATAATGAGCAGAGGTGGGGTAATTGCAGCCCCCACAAGCCCCCAGACATTGAAGTTTCCTACTTTGTCCAAACAAGGCATTCCTTTGGCCGATTTGCACGTCGATGAGATCGTTGAGAGGCAATCTCGGGCCAACCATTCTTCCCAACCATGTAAGACGCTGCAGTTACATCCTTCATTTCTGGAAGAAGCTTACGAGAGTTGCAGGAAAATCTGCGCAGAATATGCCCAGACCTTCTACTTGGGAACTTTACTGATGACGAAGGAGAGGCAGAGAGCAATTTGGGCAATATATGGTAAGGGGAAAACAAATCACATTTTTGAAGCGAACCCATTTCGGAAAGCCCACGAAAGTGAGGAGTAAGTTTTGAGTTTTTGTTGGTGCAGTTTGGTGTAGGAGAACGGATGAACTTGTGGACGGCCCCAATGCTGCATACATGAACCCAGAAGTTCTTGACCGATGGGAAGAACGTTTGCAAGACATATTTGAAGGGTGCCCTTATGACGTGCTGGACGCTGCTTTGAGTCACACGGTGTCCAAATTTCCCTTAGACATGAAGGTGCAGTGA

mRNA sequence

ATGACTTCTTCTATTTCCCTTGCGCTAAACCCTCGTATAGTCATTGGAGAATGCGAAGGGAAGCGATCCAGAGTTAGAGTTATAATGAGCAGAGGTGGGGTAATTGCAGCCCCCACAAGCCCCCAGACATTGAAGTTTCCTACTTTGTCCAAACAAGGCATTCCTTTGGCCGATTTGCACGTCGATGAGATCGTTGAGAGGCAATCTCGGGCCAACCATTCTTCCCAACCATGTAAGACGCTGCAGTTACATCCTTCATTTCTGGAAGAAGCTTACGAGAGTTGCAGGAAAATCTGCGCAGAATATGCCCAGACCTTCTACTTGGGAACTTTACTGATGACGAAGGAGAGGCAGAGAGCAATTTGGGCAATATATGTTTGGTGTAGGAGAACGGATGAACTTGTGGACGGCCCCAATGCTGCATACATGAACCCAGAAGTTCTTGACCGATGGGAAGAACGTTTGCAAGACATATTTGAAGGGTGCCCTTATGACGTGCTGGACGCTGCTTTGAGTCACACGGTGTCCAAATTTCCCTTAGACATGAAGGTGCAGTGA

Coding sequence (CDS)

ATGACTTCTTCTATTTCCCTTGCGCTAAACCCTCGTATAGTCATTGGAGAATGCGAAGGGAAGCGATCCAGAGTTAGAGTTATAATGAGCAGAGGTGGGGTAATTGCAGCCCCCACAAGCCCCCAGACATTGAAGTTTCCTACTTTGTCCAAACAAGGCATTCCTTTGGCCGATTTGCACGTCGATGAGATCGTTGAGAGGCAATCTCGGGCCAACCATTCTTCCCAACCATGTAAGACGCTGCAGTTACATCCTTCATTTCTGGAAGAAGCTTACGAGAGTTGCAGGAAAATCTGCGCAGAATATGCCCAGACCTTCTACTTGGGAACTTTACTGATGACGAAGGAGAGGCAGAGAGCAATTTGGGCAATATATGTTTGGTGTAGGAGAACGGATGAACTTGTGGACGGCCCCAATGCTGCATACATGAACCCAGAAGTTCTTGACCGATGGGAAGAACGTTTGCAAGACATATTTGAAGGGTGCCCTTATGACGTGCTGGACGCTGCTTTGAGTCACACGGTGTCCAAATTTCCCTTAGACATGAAGGTGCAGTGA

Protein sequence

MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLHVDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMKVQ

Homology

[Close]

BLAST of Csor.00g146660 vs. ExPASy Swiss-Prot
Match: P37272 (Bifunctional 15-cis-phytoene synthase, chromoplastic OS=Capsicum annuum OX=4072 GN=PSY1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 79/155 (50.97%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 31  RGGVIAAPTSPQTLKFPTLSKQGIPLADLHVDEIVERQSRANHSSQPCKTLQLHPS--FL 90
           R  ++A P    T+     S++ +    L    +V+RQ R+       K + +  +   L
Sbjct: 74  RSAIVATPAGEMTMS----SERMVYDVVLRQAALVKRQLRSTDELDVKKDIPIPGTLGLL 133

Query: 91  EEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAAYMNPEVL 150
            EAY+ C ++CAEYA+TFYLGT+LMT ER++AIWAIYVWCRRTDELVDGPNA+++ P  L
Sbjct: 134 SEAYDRCSEVCAEYAKTFYLGTMLMTPERRKAIWAIYVWCRRTDELVDGPNASHITPAAL 193

Query: 151 DRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 184
           DRWE+RL+D+F G P+D+LDAALS TVSKFP+D++
Sbjct: 194 DRWEDRLEDVFSGRPFDMLDAALSDTVSKFPVDIQ 224

[Close]

BLAST of Csor.00g146660 vs. ExPASy Swiss-Prot
Match: P49085 (Phytoene synthase 1, chloroplastic OS=Zea mays OX=4577 GN=PSY1 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-39
Identity = 72/120 (60.00%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 64  IVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWA 123
           +++RQ R        + + +  + L+EAY+ C +IC EYA+TFYLGT+LMT+ER+RAIWA
Sbjct: 91  LLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWA 150

Query: 124 IYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 183
           IYVWCRRTDELVDGPNA Y+ P  LDRWE+RL+D+F G PYD+LDAALS T+S+FP+D++
Sbjct: 151 IYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQ 210

[Close]

BLAST of Csor.00g146660 vs. ExPASy Swiss-Prot
Match: P08196 (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSY1 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-39
Identity = 79/155 (50.97%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 31  RGGVIAAPTSPQTLKFPTLSKQGIPLADLHVDEIVERQSRANHSSQ--PCKTLQLHPSFL 90
           R  ++A P+  +T+     S+Q +    L    +V+RQ R+ +  +  P   +  +   L
Sbjct: 62  RSAILATPSGERTM----TSEQMVYDVVLRQAALVKRQLRSTNELEVKPDIPIPGNLGLL 121

Query: 91  EEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAAYMNPEVL 150
            EAY+ C ++CAEYA+TF LGT+LMT ER+RAIWAIYVWCRRTDELVDGPNA+Y+ P  L
Sbjct: 122 SEAYDRCGEVCAEYAKTFNLGTMLMTPERRRAIWAIYVWCRRTDELVDGPNASYITPAAL 181

Query: 151 DRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 184
           DRWE RL+D+F G P+D+LD ALS TVS FP+D++
Sbjct: 182 DRWENRLEDVFNGRPFDMLDGALSDTVSNFPVDIQ 212

[Close]

BLAST of Csor.00g146660 vs. ExPASy Swiss-Prot
Match: Q6EI12 (Phytoene synthase 2, chloroplastic OS=Zea mays OX=4577 GN=PSY2 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-39
Identity = 76/137 (55.47%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEE--------------AYESCRKICAEYAQTF 120
           V E+V RQ+    ++ P +     P + EE              AY+ C ++CAEYA+TF
Sbjct: 74  VYEVVLRQAALVEAATPQRRRTRQPRWAEEEEEERVLGWGLLGDAYDRCGEVCAEYAKTF 133

Query: 121 YLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDV 180
           YLGT LMT ER++A+WAIYVWCRRTDELVDGPNA+Y+ P  LDRWE+RL+D+FEG PYD+
Sbjct: 134 YLGTQLMTPERRKAVWAIYVWCRRTDELVDGPNASYITPTALDRWEKRLEDLFEGRPYDM 193

Query: 181 LDAALSHTVSKFPLDMK 184
            DAALS TVSKFP+D++
Sbjct: 194 YDAALSDTVSKFPVDIQ 210

[Close]

BLAST of Csor.00g146660 vs. ExPASy Swiss-Prot
Match: Q5Z5B7 (Phytoene synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSY1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.9e-39
Identity = 70/105 (66.67%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 79  KTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGP 138
           K L L  + L++AY  C +IC EYA+TFYLGT+LMT++R+RAIWAIYVWCRRTDELVDGP
Sbjct: 116 KDLDLPRNGLKQAYHRCGEICEEYAKTFYLGTMLMTEDRRRAIWAIYVWCRRTDELVDGP 175

Query: 139 NAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 184
           NA+++ P  LDRWE+RL D+F G PYD+LDAALS T+SKFP+D++
Sbjct: 176 NASHITPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPIDIQ 220

[Close]

BLAST of Csor.00g146660 vs. NCBI nr
Match: KAG6570343.1 (Bifunctional 15-cis-phytoene synthase, chromoplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379 bits (974), Expect = 7.04e-133
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMKVQ 185
           DMKVQ
Sbjct: 181 DMKVQ 185

[Close]

BLAST of Csor.00g146660 vs. NCBI nr
Match: KAG7010227.1 (Phytoene synthase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376 bits (965), Expect = 1.49e-128
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMK 183
           DMK
Sbjct: 181 DMK 183

[Close]

BLAST of Csor.00g146660 vs. NCBI nr
Match: XP_022986176.1 (phytoene synthase 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 370 bits (951), Expect = 2.00e-126
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISL  NPRIVIG+CEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLTPNPRIVIGDCEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMK 183
           DMK
Sbjct: 181 DMK 183

[Close]

BLAST of Csor.00g146660 vs. NCBI nr
Match: XP_022943564.1 (phytoene synthase 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 368 bits (944), Expect = 2.31e-125
Identity = 179/183 (97.81%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISL  NPRIVIGECEGKRSRVRV MSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLTPNPRIVIGECEGKRSRVRVTMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIVERQSRANHSSQPC TLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVERQSRANHSSQPCNTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMK 183
           DMK
Sbjct: 181 DMK 183

[Close]

BLAST of Csor.00g146660 vs. NCBI nr
Match: XP_023513201.1 (phytoene synthase 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362 bits (928), Expect = 6.24e-123
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISL  NPRIVIGEC+GKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLTPNPRIVIGECKGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIV RQSRANHSSQP KTL LHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVARQSRANHSSQPYKTLHLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMK 183
           DMK
Sbjct: 181 DMK 183

[Close]

BLAST of Csor.00g146660 vs. ExPASy TrEMBL
Match: A0A6J1JAD4 (phytoene synthase 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483996 PE=3 SV=1)

HSP 1 Score: 370 bits (951), Expect = 9.67e-127
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISL  NPRIVIG+CEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLTPNPRIVIGDCEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMK 183
           DMK
Sbjct: 181 DMK 183

[Close]

BLAST of Csor.00g146660 vs. ExPASy TrEMBL
Match: A0A6J1FUQ1 (phytoene synthase 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111448297 PE=3 SV=1)

HSP 1 Score: 368 bits (944), Expect = 1.12e-125
Identity = 179/183 (97.81%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKRSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60
           MTSSISL  NPRIVIGECEGKRSRVRV MSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH
Sbjct: 1   MTSSISLTPNPRIVIGECEGKRSRVRVTMSRGGVIAAPTSPQTLKFPTLSKQGIPLADLH 60

Query: 61  VDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120
           VDEIVERQSRANHSSQPC TLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA
Sbjct: 61  VDEIVERQSRANHSSQPCNTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRA 120

Query: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180
           IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL
Sbjct: 121 IWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPL 180

Query: 181 DMK 183
           DMK
Sbjct: 181 DMK 183

[Close]

BLAST of Csor.00g146660 vs. ExPASy TrEMBL
Match: A0A1L5JHW5 (Phytoene synthase 2 OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 291 bits (744), Expect = 2.63e-95
Identity = 146/185 (78.92%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKR--SRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLAD 60
           M+ SIS+A  P I IGE +GK    R  +IM+R GVIAAP SPQTL FPTLSKQGIPLAD
Sbjct: 1   MSCSISVAAKPCIFIGEGKGKLFPKRSTLIMNRAGVIAAPKSPQTLDFPTLSKQGIPLAD 60

Query: 61  LHVDEIVERQSRANHSSQPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTKERQ 120
           LHV+EIVERQS+ NH S      + HP FLEEAYESCRKICAEYA+TFYLGTLLMTKERQ
Sbjct: 61  LHVEEIVERQSQGNHFSDEESCKKFHPWFLEEAYESCRKICAEYAKTFYLGTLLMTKERQ 120

Query: 121 RAIWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKF 180
           RAIWAIYVWCRRTDELVDGPNA YMNP+VLDRWEERLQDIFEG PYDVLDAALSHTVSKF
Sbjct: 121 RAIWAIYVWCRRTDELVDGPNAVYMNPKVLDRWEERLQDIFEGRPYDVLDAALSHTVSKF 180

Query: 181 PLDMK 183
           P+ MK
Sbjct: 181 PIHMK 185

[Close]

BLAST of Csor.00g146660 vs. ExPASy TrEMBL
Match: A0A6J1DHQ7 (phytoene synthase 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111021202 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 2.57e-91
Identity = 145/190 (76.32%), Postives = 161/190 (84.74%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGKR---SRVRVIMSRGGVIAAPTSP--QTLKFPTLSKQGIP 60
           M+SS SLA NPRI IG+ +G +    R  +IMSR  VIA P S   + L FPTLSKQGIP
Sbjct: 1   MSSSFSLAPNPRI-IGDRKGTKFLPRRSTLIMSRADVIAEPKSKNFRRLNFPTLSKQGIP 60

Query: 61  LADLHVDEIVERQSRANHSS--QPCKTLQLHPSFLEEAYESCRKICAEYAQTFYLGTLLM 120
           LADLHV+EIV+RQS+AN  S    CK L+LHPSFLE+AYESCR+ICAEYA+TFYLGTLLM
Sbjct: 61  LADLHVEEIVQRQSQANPFSGEDSCKELRLHPSFLEKAYESCRRICAEYAKTFYLGTLLM 120

Query: 121 TKERQRAIWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSH 180
           TKERQRAIWAIYVWCRRTDELVDGPNA YMNP+VLDRWEERLQDIFEGCPYD+LDAALSH
Sbjct: 121 TKERQRAIWAIYVWCRRTDELVDGPNAVYMNPKVLDRWEERLQDIFEGCPYDLLDAALSH 180

Query: 181 TVSKFPLDMK 183
           TVSKFP+ MK
Sbjct: 181 TVSKFPIHMK 189

[Close]

BLAST of Csor.00g146660 vs. ExPASy TrEMBL
Match: A0A0A0KZ43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280510 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 2.13e-87
Identity = 135/188 (71.81%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 1   MTSSISLALNPRIVIGECEGK--RSRVRVIMSRGGVIAAPTSPQTLKFPTLSKQGIPLAD 60
           M+S + +   P + IGEC+GK    R ++I + GGV AAP S +TLKF TLSKQGI L  
Sbjct: 1   MSSCVCVTPKPLMFIGECKGKVLPKRFKIIRNGGGVTAAPRSSETLKFQTLSKQGIALGH 60

Query: 61  LHVDEIVERQSRANH--SSQPCKT-LQLHPSFLEEAYESCRKICAEYAQTFYLGTLLMTK 120
           L V+EIVERQS  NH    + CK  ++   SFLEEAYESCRKICAEYA+TFYLGTLLMTK
Sbjct: 61  LKVEEIVERQSEGNHFLREEGCKRKMKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTK 120

Query: 121 ERQRAIWAIYVWCRRTDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTV 180
           ERQRAIWAIYVWCRRTDELVDGPNA YMNP+VLDRWEERL+DIFEGCPYD+LDAALSHTV
Sbjct: 121 ERQRAIWAIYVWCRRTDELVDGPNAMYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTV 180

Query: 181 SKFPLDMK 183
           SKFP+DMK
Sbjct: 181 SKFPIDMK 188

[Close]

BLAST of Csor.00g146660 vs. TAIR 10
Match: AT5G17230.1 (PHYTOENE SYNTHASE )

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 86  SFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAAYMNP 145
           S L EAY+ C ++CAEYA+TFYLGTLLMT ER++AIWAIYVWCRRTDELVDGPNA+++ P
Sbjct: 126 SLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHITP 185

Query: 146 EVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 184
             LDRWE RL+D+F G P+D+LDAAL+ TV+++P+D++
Sbjct: 186 MALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQ 223

[Close]

BLAST of Csor.00g146660 vs. TAIR 10
Match: AT5G17230.2 (PHYTOENE SYNTHASE )

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 86  SFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAAYMNP 145
           S L EAY+ C ++CAEYA+TFYLGTLLMT ER++AIWAIYVWCRRTDELVDGPNA+++ P
Sbjct: 126 SLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHITP 185

Query: 146 EVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 184
             LDRWE RL+D+F G P+D+LDAAL+ TV+++P+D++
Sbjct: 186 MALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQ 223

[Close]

BLAST of Csor.00g146660 vs. TAIR 10
Match: AT5G17230.3 (PHYTOENE SYNTHASE )

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-35
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 86  SFLEEAYESCRKICAEYAQTFYLGTLLMTKERQRAIWAIY---------------VWCRR 145
           S L EAY+ C ++CAEYA+TFYLGTLLMT ER++AIWAIY               VWCRR
Sbjct: 126 SLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVMLKVDFYKQSIVALVWCRR 185

Query: 146 TDELVDGPNAAYMNPEVLDRWEERLQDIFEGCPYDVLDAALSHTVSKFPLDMK 184
           TDELVDGPNA+++ P  LDRWE RL+D+F G P+D+LDAAL+ TV+++P+D++
Sbjct: 186 TDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQ 238

The following BLAST results are available for this feature:

BLAST of Csor.00g146660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37272	2.4e-40	50.97	Bifunctional 15-cis-phytoene synthase, chromoplastic OS=Capsicum annuum OX=4072 ...	[more]
P49085	3.4e-39	60.00	Phytoene synthase 1, chloroplastic OS=Zea mays OX=4577 GN=PSY1 PE=1 SV=2	[more]
P08196	3.4e-39	50.97	Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSY1 PE=1 ...	[more]
Q6EI12	7.6e-39	55.47	Phytoene synthase 2, chloroplastic OS=Zea mays OX=4577 GN=PSY2 PE=1 SV=1	[more]
Q5Z5B7	9.9e-39	66.67	Phytoene synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=P...	[more]

BLAST of Csor.00g146660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570343.1	7.04e-133	100.00	Bifunctional 15-cis-phytoene synthase, chromoplastic, partial [Cucurbita argyros...	[more]
KAG7010227.1	1.49e-128	100.00	Phytoene synthase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022986176.1	2.00e-126	98.36	phytoene synthase 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_022943564.1	2.31e-125	97.81	phytoene synthase 2, chloroplastic-like [Cucurbita moschata]	[more]
XP_023513201.1	6.24e-123	96.72	phytoene synthase 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g146660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAD4	9.67e-127	98.36	phytoene synthase 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483...	[more]
A0A6J1FUQ1	1.12e-125	97.81	phytoene synthase 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1L5JHW5	2.63e-95	78.92	Phytoene synthase 2 OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A6J1DHQ7	2.57e-91	76.32	phytoene synthase 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A0A0KZ43	2.13e-87	71.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280510 PE=3 SV=1	[more]

BLAST of Csor.00g146660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17230.1	2.3e-38	67.35	PHYTOENE SYNTHASE	[more]
AT5G17230.2	2.3e-38	67.35	PHYTOENE SYNTHASE	[more]
AT5G17230.3	2.3e-35	58.41	PHYTOENE SYNTHASE	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002060	Squalene/phytoene synthase	PFAM	PF00494	SQS_PSY	coord: 102..181 e-value: 2.1E-10 score: 40.6
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 80..184 e-value: 9.2E-22 score: 79.7
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 91..184
None	No IPR available	PANTHER	PTHR31480:SF9	PHYTOENE SYNTHASE, CHLOROPLASTIC	coord: 2..183
IPR044843	Trans-isoprenyl diphosphate synthases, bacterial-type	PANTHER	PTHR31480	BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE	coord: 2..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g146660.m01	Csor.00g146660.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004311	farnesyltranstransferase activity
molecular_function	GO:0016767	geranylgeranyl-diphosphate geranylgeranyltransferase activity
molecular_function	GO:0016740	transferase activity