Csor.00g124110 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g124110
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGlutamate--tRNA ligase
LocationCsor_Chr14: 11787006 .. 11787362 (-)
RNA-Seq ExpressionCsor.00g124110
SyntenyCsor.00g124110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGTAACTATGGCGCTTACACGAACCAGATCTCATCTCAGAGACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGTGCTTATAATCGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACAGAAGGGAGAGAGATTCTGCAATTCTCTCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTCTGTTAAAGAATTCCTCTGGAGATAG

mRNA sequence

ATGGATAGTAACTATGGCGCTTACACGAACCAGATCTCATCTCAGAGACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGTGCTTATAATCGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACAGAAGGGAGAGAGATTCTGCAATTCTCTCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTCTGTTAAAGAATTCCTCTGGAGATAG

Coding sequence (CDS)

ATGGATAGTAACTATGGCGCTTACACGAACCAGATCTCATCTCAGAGACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGTGCTTATAATCGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACAGAAGGGAGAGAGATTCTGCAATTCTCTCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTCTGTTAAAGAATTCCTCTGGAGATAG

Protein sequence

MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTSSSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR
Homology
BLAST of Csor.00g124110 vs. NCBI nr
Match: KAG6581812.1 (hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227 bits (579), Expect = 7.96e-75
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS
Sbjct: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           SSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR
Sbjct: 61  SSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118

BLAST of Csor.00g124110 vs. NCBI nr
Match: KAE8637311.1 (hypothetical protein CSA_023553, partial [Cucumis sativus])

HSP 1 Score: 178 bits (451), Expect = 2.54e-55
Identity = 98/119 (82.35%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSNY AY NQ SSQRPLAI LALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTS
Sbjct: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63

Query: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           SSCSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 64  SSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 117

BLAST of Csor.00g124110 vs. NCBI nr
Match: KAA0058525.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 2.21e-53
Identity = 97/119 (81.51%), Postives = 101/119 (84.87%), Query Frame = 0

Query: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSNY AY NQ SS RPLAIVLALASAV LSPLR YE+ WSSGFV+PLVLL LIIAIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           S CSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SCCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of Csor.00g124110 vs. NCBI nr
Match: XP_030969466.1 (uncharacterized protein LOC115989757 [Quercus lobata])

HSP 1 Score: 141 bits (356), Expect = 9.01e-41
Identity = 79/119 (66.39%), Postives = 93/119 (78.15%), Query Frame = 0

Query: 8   YTNQISSQRPLAIVLALASAVVLSPL--------RPYESRWSSGFVLPLVLLVLIIAIKT 67
           YT+Q SSQR +A+VLAL SA+VLSPL        R YE++WSSGFVLP+VL  LIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS  +  R S I S DPSWVL+IGSSSWGLAG+L+ML+  LSWQ SV+EF WR
Sbjct: 66  TSSCSSMSA-QGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

BLAST of Csor.00g124110 vs. NCBI nr
Match: KAF3958642.1 (hypothetical protein CMV_016470 [Castanea mollissima])

HSP 1 Score: 141 bits (356), Expect = 9.29e-41
Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 0

Query: 8   YTNQISSQRPLAIVLALASAVVLSPL--------RPYESRWSSGFVLPLVLLVLIIAIKT 67
           YT+Q SSQR +A+VLAL SA+VLSPL        R  E++WSSGFVLP+VL  LIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYSETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS     R S I S DPSWVL+IGSSSWGLAG+L+ML+  LSWQ SV+EF WR
Sbjct: 66  TSSCSSMSAQGGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 124

BLAST of Csor.00g124110 vs. ExPASy TrEMBL
Match: A0A0A0LEN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.12e-55
Identity = 98/119 (82.35%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSNY AY NQ SSQRPLAI LALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           SSCSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of Csor.00g124110 vs. ExPASy TrEMBL
Match: A0A5A7UY99 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001090 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.07e-53
Identity = 97/119 (81.51%), Postives = 101/119 (84.87%), Query Frame = 0

Query: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60
           MDSNY AY NQ SS RPLAIVLALASAV LSPLR YE+ WSSGFV+PLVLL LIIAIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           S CSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SCCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of Csor.00g124110 vs. ExPASy TrEMBL
Match: A0A2N9IBH6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 3.17e-41
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 8   YTNQISSQRPLAIVLALASAVVLSPLRP--------YESRWSSGFVLPLVLLVLIIAIKT 67
           YT Q SSQR +A+VL+L SA+VLSPL          YE++WSSGFVLP+VL+ LIIAI+T
Sbjct: 6   YTGQYSSQRSVAMVLSLVSAIVLSPLYARRKNDTSYYETKWSSGFVLPMVLVGLIIAIRT 65

Query: 68  SSSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS     R S I S DPSWVL+IGSSSWGLAG+L+ML+  LSWQ+SV+EF WR
Sbjct: 66  TSSCSSMSAQGGARASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQASVQEFFWR 124

BLAST of Csor.00g124110 vs. ExPASy TrEMBL
Match: A0A7N2LMQ6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 4.36e-41
Identity = 79/119 (66.39%), Postives = 93/119 (78.15%), Query Frame = 0

Query: 8   YTNQISSQRPLAIVLALASAVVLSPL--------RPYESRWSSGFVLPLVLLVLIIAIKT 67
           YT+Q SSQR +A+VLAL SA+VLSPL        R YE++WSSGFVLP+VL  LIIAIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118
           +SSCSSMS  +  R S I S DPSWVL+IGSSSWGLAG+L+ML+  LSWQ SV+EF WR
Sbjct: 66  TSSCSSMSA-QGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

BLAST of Csor.00g124110 vs. ExPASy TrEMBL
Match: A0A6J5WRZ7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS18716 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 3.30e-39
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 0

Query: 7   AYTNQISSQRPLAIVLALASAVVLSPL---------RPYESRWSSGFVLPLVLLVLIIAI 66
           AYT+  SSQR  A+VLAL SA+VLSPL         R YE++WSSGFVLP+VL  LIIAI
Sbjct: 7   AYTSHSSSQRSTALVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSSCSSMSTDRRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLW 118
           KT+SS SS S+   + DS + S +PSWVL+IGSSSWGLAG+L++L+  LSWQ SV EFLW
Sbjct: 67  KTTSSSSSSSSSSSQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLW 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6581812.17.96e-75100.00hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8637311.12.54e-5582.35hypothetical protein CSA_023553, partial [Cucumis sativus][more]
KAA0058525.12.21e-5381.51putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative t... [more]
XP_030969466.19.01e-4166.39uncharacterized protein LOC115989757 [Quercus lobata][more]
KAF3958642.19.29e-4165.55hypothetical protein CMV_016470 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
A0A0A0LEN31.12e-5582.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1[more]
A0A5A7UY991.07e-5381.51Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A2N9IBH63.17e-4163.87Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1[more]
A0A7N2LMQ64.36e-4166.39Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6J5WRZ73.30e-3961.98Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS18716 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35758:SF1SERINE RICH PROTEINcoord: 1..118
NoneNo IPR availablePANTHERPTHR35758TRANSMEMBRANE PROTEINcoord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g124110.m01Csor.00g124110.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane