Csor.00g115350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g115350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Csor_Chr07: 954403 .. 956133 (-)
RNA-Seq Expression	Csor.00g115350
Synteny	Csor.00g115350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGAGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCCACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGCCCAGTGCTGTTCCTTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACAAGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGCAGTCTGGATGCCCTGATCGGCCGACTCCGTGCCGCCTACGAGGAGAGTGGAGGTTCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGATCCTTCCTTCATCCATTTCCATGGTGATAATAATTCTTCCTTCATCCATTTTTTTGTTCTTTTAATGTCATGTCATCATCCATTTGAAATATAATTCGAAAACCCATGCTTTGAATCATGATAGTATATATATATTTAAGAAGATGGGTTGATTGGGAAATCATGATCGGATAAGTGCATTAAAAAAAAAAAAAAAAAACCCTAATTTGAGGATGCTTCTGAAAACCCTAATTTGCACCATACACCATTATTTAGAAAGGGAAAAAAGAAATGTGAAAACAGATGTTCATCTTTTTACCCTTTCTGATGCCATCAGAAATAGAGCTTTGATTGGTGTGCCATTCATTCACACCCTCTCTCTCTCTCTCATCAAATCAACCAAAACCACACTGTTTATTTAATATTTCAAACTAAAATGTTTACTTTTCAATAGATTTGGCCCTTTTCTGATTCTATTCGATTTTGTGCTCCCCATGCATGGGCATCCATCATCATCATCATTACCATCCAATGTCATGTTCACATGTAATCTAATTACCTACCTAATGCTTTTTTAATTTTATATATGTATCATTAGACTATAGTTGATATTAATTCAGGATAGTTTGATTGCTAATTTCAAATGGATGAAATTTTGAAGTAATTAATGAGGTTTAAGATAGTGTGTTTGATTAATTAGCTCAATAATTTTCAAATTTCAAATCAATTAAAAATTCTATCTTTAGCTCTTCATTTATGTAGCTCAACCTACACTCTTCAGTACTATTTTCCCCATTCATGCAGGAATCCAAAACAAATAATTCAATTTTTTGAAAATTGTGATTTCTTTTACAAATTTCAAAGAAAAAAAAAAACCCCAAGTTTTTATTTTGAATTTTATTCGTAAAAGGTAGATAATAATAATAAAAAATATAGATATTTTTAGTTGTGGATTATAATAAACCCTTAATTGCATTATATATAATGCGCCACACTGAGATTTCCGTAAATCATATAGGTTTATAATATTAATACCATTTCTTTTTGCTGTCACATATGCCCCCACAAACTTATACTAAATGAATATTTGTTGTAATTGCAGGAAGTGAAAGGAAGATGGGTGTGAGGAGGAAGGGAAGAAGTGGAGAAGAAGAATTGCAATATTGGTTGTGA

mRNA sequence

ATGTTAGGAGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCCACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGCCCAGTGCTGTTCCTTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACAAGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGCAGTCTGGATGCCCTGATCGGCCGACTCCGTGCCGCCTACGAGGAGAGTGGAGGTTCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGAATTCCATGGCTTGATCCTTCCTTCATCCATTTCCATGGAAGTGAAAGGAAGATGGGTGTGAGGAGGAAGGGAAGAAGTGGAGAAGAAGAATTGCAATATTGGTTGTGA

Coding sequence (CDS)

ATGTTAGGAGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCCACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGCCCAGTGCTGTTCCTTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACAAGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGCAGTCTGGATGCCCTGATCGGCCGACTCCGTGCCGCCTACGAGGAGAGTGGAGGTTCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGAATTCCATGGCTTGATCCTTCCTTCATCCATTTCCATGGAAGTGAAAGGAAGATGGGTGTGAGGAGGAAGGGAAGAAGTGGAGAAGAAGAATTGCAATATTGGTTGTGA

Protein sequence

MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPWLDPSFIHFHGSERKMGVRRKGRSGEEELQYWL

Homology

[Close]

BLAST of Csor.00g115350 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-62
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 32  TQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHS 91
           ++P   P SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHVL+FLRYLDQFGKT+VH 
Sbjct: 17  SEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHV 76

Query: 92  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLRE 151
            GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR+YLRE
Sbjct: 77  PGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLRE 136

Query: 152 VKDCQAKARGIPW 165
           V++CQAKARGIP+
Sbjct: 137 VRECQAKARGIPY 148

[Close]

BLAST of Csor.00g115350 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-58
Identity = 109/162 (67.28%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 7   GGCEGSSSRSATVDPQQQLQPPPQPTQPSAVP----LSRYESQKRRDWNTFGQYLKNQTP 66
           G  EGSS        Q Q QP PQP QP + P    LSRYESQKRRDWNTF QYL+NQ P
Sbjct: 10  GIAEGSS--------QPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQP 69

Query: 67  PVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIG 126
           PV +S C  NH+L+FL+YLDQFGKT+VH HGCVFFGQ +P   C CPLKQAWGSLDALIG
Sbjct: 70  PVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIG 129

Query: 127 RLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 165
           RLRAA+EE+GG PE NPF  G IR++LREV+D QAKARG+P+
Sbjct: 130 RLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPY 163

[Close]

BLAST of Csor.00g115350 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-57
Identity = 104/138 (75.36%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 28  PPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKT 87
           PPQP Q    PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +Y HVL FLRYLDQFGKT
Sbjct: 28  PPQPQQ----PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKT 87

Query: 88  RVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE-SGGSPEVNPFGNGAIR 147
           +VH   CVFFGQPDPP PC CPLKQAWGSLDALIGRLRAAYEE  GGSP+ NPF NG+IR
Sbjct: 88  KVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIR 147

Query: 148 MYLREVKDCQAKARGIPW 165
           ++LREV++ QAKARGIP+
Sbjct: 148 VHLREVRESQAKARGIPY 161

[Close]

BLAST of Csor.00g115350 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-56
Identity = 97/126 (76.98%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 39  LSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFG 98
           LSRYE+QKRRDWNTFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  QPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAK 158
            P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NPFG  A+R+YLREV+D QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIPW 165
           ARGI +
Sbjct: 166 ARGISY 171

[Close]

BLAST of Csor.00g115350 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-56
Identity = 103/157 (65.61%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 8   GCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLS 67
           G  G +   A   P  Q  P  QP Q     LSRYESQKRRDWNTF QYL+N  PP+ L+
Sbjct: 3   GGGGGADAQAQAQPVAQAPPAMQPMQ----QLSRYESQKRRDWNTFLQYLRNHRPPLTLA 62

Query: 68  HCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAA 127
            C+  HV+EFL+YLDQFGKT+VH+ GC ++GQP PPAPCPCPL+QAWGSLDALIGRLRAA
Sbjct: 63  RCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAA 122

Query: 128 YEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 165
           YEESG +PE NPF   A+R+YLREV+D QAKARGIP+
Sbjct: 123 YEESGHAPESNPFAARAVRIYLREVRDAQAKARGIPY 155

[Close]

BLAST of Csor.00g115350 vs. NCBI nr
Match: KAG6594547.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424 bits (1091), Expect = 2.34e-150
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPWLDPSFIHFHGSERKMG 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPWLDPSFIHFHGSERKMG
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPWLDPSFIHFHGSERKMG 180

Query: 181 VRRKGRSGEEELQYWL 196
           VRRKGRSGEEELQYWL
Sbjct: 181 VRRKGRSGEEELQYWL 196

[Close]

BLAST of Csor.00g115350 vs. NCBI nr
Match: XP_022926651.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926652.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >KAG7026524.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352 bits (903), Expect = 9.46e-122
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 164

[Close]

BLAST of Csor.00g115350 vs. NCBI nr
Match: XP_023518847.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >XP_023518848.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346 bits (887), Expect = 2.60e-119
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVD QQQLQPPPQPTQ SAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 164

[Close]

BLAST of Csor.00g115350 vs. NCBI nr
Match: XP_023003302.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003303.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003304.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 332 bits (852), Expect = 5.42e-114
Identity = 156/164 (95.12%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD P  CE SSSRSAT D QQQLQPPPQPTQPS VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTPS-CEASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 163

[Close]

BLAST of Csor.00g115350 vs. NCBI nr
Match: KAA0052619.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK13209.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (712), Expect = 1.92e-92
Identity = 140/166 (84.34%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQPTQPSAV-PLSRYESQKRRDWNTFGQYLK 60
           MLG+R   CEGSSS  A T D QQQ Q      QP AV PLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           ALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIP+
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPY 165

[Close]

BLAST of Csor.00g115350 vs. ExPASy TrEMBL
Match: A0A6J1EEZ4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433720 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 4.58e-122
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 164

[Close]

BLAST of Csor.00g115350 vs. ExPASy TrEMBL
Match: A0A6J1KW42 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111496952 PE=3 SV=1)

HSP 1 Score: 332 bits (852), Expect = 2.62e-114
Identity = 156/164 (95.12%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD P  CE SSSRSAT D QQQLQPPPQPTQPS VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTPS-CEASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 163

[Close]

BLAST of Csor.00g115350 vs. ExPASy TrEMBL
Match: A0A5A7UGI5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008220 PE=3 SV=1)

HSP 1 Score: 278 bits (712), Expect = 9.29e-93
Identity = 140/166 (84.34%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQPTQPSAV-PLSRYESQKRRDWNTFGQYLK 60
           MLG+R   CEGSSS  A T D QQQ Q      QP AV PLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           ALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIP+
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPY 165

[Close]

BLAST of Csor.00g115350 vs. ExPASy TrEMBL
Match: A0A0A0KNK5 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.34e-90
Identity = 138/167 (82.63%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQPTQPSA--VPLSRYESQKRRDWNTFGQYL 60
           MLG+R   CEGSSS  A T D QQQ Q   Q    +   VPLSRYESQKRRDWNTFGQYL
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQQQQQQAGQAQAGTGAGVPLSRYESQKRRDWNTFGQYL 60

Query: 61  KNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL 120
           KNQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL
Sbjct: 61  KNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           DALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIP+
Sbjct: 121 DALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPY 166

[Close]

BLAST of Csor.00g115350 vs. ExPASy TrEMBL
Match: A0A1S3CP28 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503153 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.44e-90
Identity = 140/171 (81.87%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQP-----TQPSAV-PLSRYESQKRRDWNTF 60
           MLG+R   CEGSSS  A T D Q Q Q   Q       QP AV PLSRYESQKRRDWNTF
Sbjct: 1   MLGERAI-CEGSSSGLAITADQQHQQQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTF 60

Query: 61  GQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA 120
           GQYLKNQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA
Sbjct: 61  GQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA 120

Query: 121 WGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164
           WGSLDALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIP+
Sbjct: 121 WGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPY 170

[Close]

BLAST of Csor.00g115350 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-63
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 32  TQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHS 91
           ++P   P SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHVL+FLRYLDQFGKT+VH 
Sbjct: 17  SEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHV 76

Query: 92  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLRE 151
            GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR+YLRE
Sbjct: 77  PGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLRE 136

Query: 152 VKDCQAKARGIPW 165
           V++CQAKARGIP+
Sbjct: 137 VRECQAKARGIPY 148

[Close]

BLAST of Csor.00g115350 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-63
Identity = 105/133 (78.95%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 32  TQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHS 91
           ++P   P SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHVL+FLRYLDQFGKT+VH 
Sbjct: 17  SEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHV 76

Query: 92  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLRE 151
            GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR+YLRE
Sbjct: 77  PGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLRE 136

Query: 152 VKDCQAKARGIPW 165
           V++CQAKARGIP+
Sbjct: 137 VRECQAKARGIPY 148

[Close]

BLAST of Csor.00g115350 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59
Identity = 109/162 (67.28%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 7   GGCEGSSSRSATVDPQQQLQPPPQPTQPSAVP----LSRYESQKRRDWNTFGQYLKNQTP 66
           G  EGSS        Q Q QP PQP QP + P    LSRYESQKRRDWNTF QYL+NQ P
Sbjct: 10  GIAEGSS--------QPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQP 69

Query: 67  PVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIG 126
           PV +S C  NH+L+FL+YLDQFGKT+VH HGCVFFGQ +P   C CPLKQAWGSLDALIG
Sbjct: 70  PVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIG 129

Query: 127 RLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 165
           RLRAA+EE+GG PE NPF  G IR++LREV+D QAKARG+P+
Sbjct: 130 RLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPY 163

[Close]

BLAST of Csor.00g115350 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-58
Identity = 104/138 (75.36%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 28  PPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKT 87
           PPQP Q    PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +Y HVL FLRYLDQFGKT
Sbjct: 28  PPQPQQ----PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKT 87

Query: 88  RVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE-SGGSPEVNPFGNGAIR 147
           +VH   CVFFGQPDPP PC CPLKQAWGSLDALIGRLRAAYEE  GGSP+ NPF NG+IR
Sbjct: 88  KVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIR 147

Query: 148 MYLREVKDCQAKARGIPW 165
           ++LREV++ QAKARGIP+
Sbjct: 148 VHLREVRESQAKARGIPY 161

[Close]

BLAST of Csor.00g115350 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-57
Identity = 97/126 (76.98%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 39  LSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFG 98
           LSRYE+QKRRDWNTFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  QPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAK 158
            P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NPFG  A+R+YLREV+D QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIPW 165
           ARGI +
Sbjct: 166 ARGISY 171

The following BLAST results are available for this feature:

BLAST of Csor.00g115350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.3e-62	78.95	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	5.9e-58	67.28	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9SN52	2.2e-57	75.36	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	2.5e-56	76.98	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2Y5N0	3.2e-56	65.61	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of Csor.00g115350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594547.1	2.34e-150	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022926651.1	9.46e-122	99.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926...	[more]
XP_023518847.1	2.60e-119	98.17	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >X...	[more]
XP_023003302.1	5.42e-114	95.12	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_02300330...	[more]
KAA0052619.1	1.92e-92	84.34	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Csor.00g115350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEZ4	4.58e-122	99.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KW42	2.62e-114	95.12	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7UGI5	9.29e-93	84.34	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0KNK5	1.34e-90	82.63	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 S...	[more]
A0A1S3CP28	1.44e-90	81.87	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Csor.00g115350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.6e-63	78.95	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.6e-63	78.95	Protein of unknown function (DUF640)	[more]
AT1G78815.1	4.2e-59	67.28	Protein of unknown function (DUF640)	[more]
AT4G18610.1	1.6e-58	75.36	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.8e-57	76.98	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..154 e-value: 2.3E-62 score: 208.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 41..168 score: 71.355087
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 9..164
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 9..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g115350.m01	Csor.00g115350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus