Csor.00g111290 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g111290
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCsor_Chr07: 2780447 .. 2780988 (-)
RNA-Seq ExpressionCsor.00g111290
SyntenyCsor.00g111290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAACTGAGCATGAAGTGTTTGGGCATCGCCTGGAAACAACTCCCCATGATTCCACCAATGACAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAAGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATGCTCTGCAGGACTCCGGTGTTGTTTTACGCTCCTGTCTACTGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAAGTATAGAACCTGTAATTTAAGAGCCTTATCATGAAGAATGATTCATTTTGTAGTTTCTATAAAAGATTTGGTTTTTAATATTTGGTGCATCATTACTGCTGTTGAACAATCTACCATGCATCATCATTATACTGAATTGATGAGAAGTATTCATTGTTTTTTGGATTCAGTTTATTGCAGTTGATGCCATTGATCGGTCTATTCCATCATCGAGGAAACTACATATGGGACCTTGTGTTCTAA

mRNA sequence

ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAACTGAGCATGAAGTGTTTGGGCATCGCCTGGAAACAACTCCCCATGATTCCACCAATGACAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAAGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATGCTCTGCAGGACTCCGGTGTTGTTTTACGCTCCTGTCTACTGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAATTTATTGCAGTTGATGCCATTGATCGGTCTATTCCATCATCGAGGAAACTACATATGGGACCTTGTGTTCTAA

Coding sequence (CDS)

ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAACTGAGCATGAAGTGTTTGGGCATCGCCTGGAAACAACTCCCCATGATTCCACCAATGACAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAAGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATGCTCTGCAGGACTCCGGTGTTGTTTTACGCTCCTGTCTACTGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAATTTATTGCAGTTGATGCCATTGATCGGTCTATTCCATCATCGAGGAAACTACATATGGGACCTTGTGTTCTAA

Protein sequence

MLSSDIYWILPSQEEFPPQFFSASSFHGVTEHEVFGHRLETTPHDSTNDRDADFEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSRILSAHENLLQLMPLIGLFHHRGNYIWDLVF
Homology
BLAST of Csor.00g111290 vs. ExPASy Swiss-Prot
Match: Q9FH87 (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 40  ETTPHDSTNDRDADFEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSR 94
           + T +   ++  +D EK Y ILRKFH+RV KLE AL +SGV LR  L+E+VL+R
Sbjct: 69  DRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNR 122

BLAST of Csor.00g111290 vs. ExPASy Swiss-Prot
Match: P0C8A0 (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 43  PHDSTNDRDADFEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSR 94
           P    ++   + EK+Y ILR  H+RV KLE AL +SG+ LR  L+ +VLSR
Sbjct: 56  PEKHEDEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSR 106

BLAST of Csor.00g111290 vs. NCBI nr
Match: KAG6594952.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (646), Expect = 6.93e-85
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MLSSDIYWILPSQEEFPPQFFSASSFHGVTEHEVFGHRLETTPHDSTNDRDADFEKVYWI 60
           MLSSDIYWILPSQEEFPPQFFSASSFHGVTEHEVFGHRLETTPHDSTNDRDADFEKVYWI
Sbjct: 1   MLSSDIYWILPSQEEFPPQFFSASSFHGVTEHEVFGHRLETTPHDSTNDRDADFEKVYWI 60

Query: 61  LRKFHARVQKLEHALQDSGVVLRSCLLEQVLSRILSAHENLLQLMPLIGLFHHRGNYIWD 120
           LRKFHARVQKLEHALQDSGVVLRSCLLEQVLSRILSAHENLLQLMPLIGLFHHRGNYIWD
Sbjct: 61  LRKFHARVQKLEHALQDSGVVLRSCLLEQVLSRILSAHENLLQLMPLIGLFHHRGNYIWD 120

Query: 121 LVF 123
           LVF
Sbjct: 121 LVF 123

BLAST of Csor.00g111290 vs. NCBI nr
Match: XP_038877798.1 (pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877799.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877800.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877801.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877802.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 3.03e-15
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 22  SASSFHGVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHAL 81
           S +S +G T+H  FG   L+TTPH+ST DRDAD      EKVY ILRKFH RV KLE AL
Sbjct: 39  SQTSPNGTTQHGGFGPIHLKTTPHESTRDRDADEFSIDVEKVYRILRKFHTRVPKLELAL 98

Query: 82  QDSGVVLRSCLLEQVLSR 93
           Q+SGV+LRS L E+VLSR
Sbjct: 99  QESGVILRSGLPERVLSR 116

BLAST of Csor.00g111290 vs. NCBI nr
Match: XP_023544375.1 (putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 3.04e-15
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 28  GVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHALQDSGVV 87
           G TE   FG   L+TTPHDSTNDRDAD      EKVY ILRKFH RV KLE ALQ+SGVV
Sbjct: 52  GTTETGGFGPIHLKTTPHDSTNDRDADEFSADVEKVYRILRKFHTRVPKLELALQESGVV 111

Query: 88  LRSCLLEQVLSR 93
           LRS L E+VLSR
Sbjct: 112 LRSGLPERVLSR 123

BLAST of Csor.00g111290 vs. NCBI nr
Match: KAG7034267.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 3.06e-15
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 28  GVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHALQDSGVV 87
           G TE   FG   L+TTPHDSTNDRDAD      EKVY ILRKFH RV KLE ALQ+SGVV
Sbjct: 101 GTTETGGFGPIHLKTTPHDSTNDRDADEFSADVEKVYRILRKFHTRVPKLELALQESGVV 160

Query: 88  LRSCLLEQVLSR 93
           LRS L E+VLSR
Sbjct: 161 LRSGLPERVLSR 172

BLAST of Csor.00g111290 vs. NCBI nr
Match: KAG6604102.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.16e-15
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 28  GVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHALQDSGVV 87
           G TE   FG   L+TTPHDSTNDRDAD      EKVY ILRKFH RV KLE ALQ+SGVV
Sbjct: 52  GTTETGGFGPIHLKTTPHDSTNDRDADEFSADVEKVYRILRKFHTRVPKLELALQESGVV 111

Query: 88  LRSCLLEQVLSR 93
           LRS L E+VLSR
Sbjct: 112 LRSGLPERVLSR 123

BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A6J1GEW3 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita moschata OX=3662 GN=LOC111453556 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.73e-15
Identity = 49/72 (68.06%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 28  GVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHALQDSGVV 87
           G TE   FG   L+TTPHDSTNDRDAD      EK+Y ILRKFH RV KLE ALQ+SGVV
Sbjct: 52  GTTETGGFGPIHLKTTPHDSTNDRDADEFSADVEKMYRILRKFHTRVPKLELALQESGVV 111

Query: 88  LRSCLLEQVLSR 93
           LRS L E+VLSR
Sbjct: 112 LRSGLPERVLSR 123

BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A6J1IJP9 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita maxima OX=3661 GN=LOC111478047 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.95e-15
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 0

Query: 39  LETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSR 93
           L+TTPHDSTNDRDAD      EKVY ILRKFH RV KLE ALQ+SGVVLRS L E+VLSR
Sbjct: 64  LKTTPHDSTNDRDADEFSADVEKVYRILRKFHTRVPKLELALQESGVVLRSGLPERVLSR 123

BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A0A0KPG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011710 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.13e-13
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 22  SASSFHGVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHAL 81
           S +S +G T+   FG   L+TTPH+S +DRDAD      EKVY ILRKFH RV KLE AL
Sbjct: 39  SQTSPNGTTQRGGFGPIHLKTTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELAL 98

Query: 82  QDSGVVLRSCLLEQVLSR 93
           Q+SGV++RS L E+VLSR
Sbjct: 99  QESGVIMRSGLPERVLSR 116

BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A5A7VI13 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00860 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.97e-13
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 22  SASSFHGVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHAL 81
           S +S +G  +   FG   L+TTPH+ST+D DAD      EKVY ILRKFH RV KLE AL
Sbjct: 39  SQTSPNGTPQRGWFGPIHLKTTPHESTHDIDADEFSVDVEKVYRILRKFHTRVPKLELAL 98

Query: 82  QDSGVVLRSCLLEQVLSR 93
           Q+SGV+LRS L E+VLSR
Sbjct: 99  QESGVILRSGLPERVLSR 116

BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A1S3CMX3 (pentatricopeptide repeat-containing protein At3g49730-like OS=Cucumis melo OX=3656 GN=LOC103502772 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.97e-13
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 22  SASSFHGVTEHEVFGH-RLETTPHDSTNDRDAD-----FEKVYWILRKFHARVQKLEHAL 81
           S +S +G  +   FG   L+TTPH+ST+D DAD      EKVY ILRKFH RV KLE AL
Sbjct: 39  SQTSPNGTPQRGWFGPIHLKTTPHESTHDIDADEFSVDVEKVYRILRKFHTRVPKLELAL 98

Query: 82  QDSGVVLRSCLLEQVLSR 93
           Q+SGV+LRS L E+VLSR
Sbjct: 99  QESGVILRSGLPERVLSR 116

BLAST of Csor.00g111290 vs. TAIR 10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 40  ETTPHDSTNDRDADFEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSR 94
           + T +   ++  +D EK Y ILRKFH+RV KLE AL +SGV LR  L+E+VL+R
Sbjct: 69  DRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNR 122

BLAST of Csor.00g111290 vs. TAIR 10
Match: AT3G49730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 43  PHDSTNDRDADFEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSR 94
           P    ++   + EK+Y ILR  H+RV KLE AL +SG+ LR  L+ +VLSR
Sbjct: 56  PEKHEDEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSR 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FH873.3e-0651.85Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th... [more]
P0C8A05.3e-0447.06Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
KAG6594952.16.93e-85100.00putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
XP_038877798.13.03e-1562.82pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >... [more]
XP_023544375.13.04e-1569.44putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita pepo s... [more]
KAG7034267.13.06e-1569.44putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
KAG6604102.13.16e-1569.44putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
Match NameE-valueIdentityDescription
A0A6J1GEW33.73e-1568.06putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita mosc... [more]
A0A6J1IJP96.95e-1575.00putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita maxi... [more]
A0A0A0KPG01.13e-1358.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011710 PE=4 SV=1[more]
A0A5A7VI139.97e-1358.97Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMX39.97e-1358.97pentatricopeptide repeat-containing protein At3g49730-like OS=Cucumis melo OX=36... [more]
Match NameE-valueIdentityDescription
AT5G65820.12.3e-0751.85Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G49730.13.7e-0547.06Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46128:SF58BNACNNG21610D PROTEINcoord: 21..95
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 21..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g111290.m01Csor.00g111290.m01mRNA