Csor.00g111290 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAACTGAGCATGAAGTGTTTGGGCATCGCCTGGAAACAACTCCCCATGATTCCACCAATGACAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAAGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATGCTCTGCAGGACTCCGGTGTTGTTTTACGCTCCTGTCTACTGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAAGTATAGAACCTGTAATTTAAGAGCCTTATCATGAAGAATGATTCATTTTGTAGTTTCTATAAAAGATTTGGTTTTTAATATTTGGTGCATCATTACTGCTGTTGAACAATCTACCATGCATCATCATTATACTGAATTGATGAGAAGTATTCATTGTTTTTTGGATTCAGTTTATTGCAGTTGATGCCATTGATCGGTCTATTCCATCATCGAGGAAACTACATATGGGACCTTGTGTTCTAA ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAACTGAGCATGAAGTGTTTGGGCATCGCCTGGAAACAACTCCCCATGATTCCACCAATGACAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAAGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATGCTCTGCAGGACTCCGGTGTTGTTTTACGCTCCTGTCTACTGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAATTTATTGCAGTTGATGCCATTGATCGGTCTATTCCATCATCGAGGAAACTACATATGGGACCTTGTGTTCTAA ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAACTGAGCATGAAGTGTTTGGGCATCGCCTGGAAACAACTCCCCATGATTCCACCAATGACAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAAGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATGCTCTGCAGGACTCCGGTGTTGTTTTACGCTCCTGTCTACTGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAATTTATTGCAGTTGATGCCATTGATCGGTCTATTCCATCATCGAGGAAACTACATATGGGACCTTGTGTTCTAA MLSSDIYWILPSQEEFPPQFFSASSFHGVTEHEVFGHRLETTPHDSTNDRDADFEKVYWILRKFHARVQKLEHALQDSGVVLRSCLLEQVLSRILSAHENLLQLMPLIGLFHHRGNYIWDLVF Homology
BLAST of Csor.00g111290 vs. ExPASy Swiss-Prot
Match: Q9FH87 (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of Csor.00g111290 vs. ExPASy Swiss-Prot
Match: P0C8A0 (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0
BLAST of Csor.00g111290 vs. NCBI nr
Match: KAG6594952.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 253 bits (646), Expect = 6.93e-85 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of Csor.00g111290 vs. NCBI nr
Match: XP_038877798.1 (pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877799.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877800.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877801.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida] >XP_038877802.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida]) HSP 1 Score: 82.0 bits (201), Expect = 3.03e-15 Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0
BLAST of Csor.00g111290 vs. NCBI nr
Match: XP_023544375.1 (putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 82.0 bits (201), Expect = 3.04e-15 Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Csor.00g111290 vs. NCBI nr
Match: KAG7034267.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 82.0 bits (201), Expect = 3.06e-15 Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Csor.00g111290 vs. NCBI nr
Match: KAG6604102.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 82.0 bits (201), Expect = 3.16e-15 Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A6J1GEW3 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita moschata OX=3662 GN=LOC111453556 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 3.73e-15 Identity = 49/72 (68.06%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A6J1IJP9 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita maxima OX=3661 GN=LOC111478047 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 6.95e-15 Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 0
BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A0A0KPG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011710 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 1.13e-13 Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 0
BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A5A7VI13 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00860 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 9.97e-13 Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Csor.00g111290 vs. ExPASy TrEMBL
Match: A0A1S3CMX3 (pentatricopeptide repeat-containing protein At3g49730-like OS=Cucumis melo OX=3656 GN=LOC103502772 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 9.97e-13 Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Csor.00g111290 vs. TAIR 10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of Csor.00g111290 vs. TAIR 10
Match: AT3G49730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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