Csor.00g106540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g106540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 5901034 .. 5902133 (-)
RNA-Seq Expression	Csor.00g106540
Synteny	Csor.00g106540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAGAAGGGCTCCCCACCTACGCAACTATGCGTGCATACAAACTTGCTTAAGAGGAGGAGATGCGTGCTCTCTGCCACATGCCTCCTGGTCAAAACAGGTAAAGGGGGTGAATCAGGTTGCGGATGCTGAGTCGAGCCTCGGGTTGGATCCAGACGGTGCTTCACCACCAGATGTCAGACACGTTGGTCTACTCAGAATGTGACATGTATTCAACTAGTGGGCGAAAAGTTCGAAATTGGAAGGAAAGATCGAAAAATTAATCATAGTTGGAATTGAGGTGTTATAAGTAGGGATGTTTTAAGAAAGGATAATATAGTAATTTCATACCCTTTGTCCTATTAAAATAAAAAATCATACGGCTCAAAACTTTGGAGATAATTTATGATGTGTAAATAGATATTTTCGGTTCATAATATATTGACATAAATAAAATTTTTTAAACTTTTTTTTATAAAATAGCCGGCGTTAATGTTATTTTTAAAATAAATATATTTTTTAAATTCTAATTATATATTTTTTTAAAAAAGTTGAAAACTATTAATTTATTTTTCCTAATTTTGGCAAATTCCCAATATTTTTGAAGGTGAAAGAATCAAAATTGGTTTCCACATGGAGAGCGTTCAAAATAATTCTGGTCTAAAACTATAAAGATTCTCCACCAATTCTGGAGCTCTCCGTTGCCATCGCAGATCCTCGTCGTGGACCGATTCCGACCGCCGTCACTCTGTTTCACGCAATTCCTCTCTTTGTTCCGTTTTGCCGTTTCTCCTCATCGCCGGCGCCGGGACCGGGACCCTGCTCTGCCCTTCAATACCCTCCCATTACAGCCCCATCATCCGCCGTTCTCCGACACGTCCATATCCGCCGTCTTTTCTCTTTCCTATATTTTCCCCTAAAACCCTTCTCCTGTCGCTCTGCTTAGGATCATTTCTATTAGCTTCCAGTGATTAGGCCGTTCCAAGTTTCTGGTAAGGTCACCGGTTCTGACTCTGACTGATCGGCTTCAGTTTGTTCTTATCTCTATCCTTCTCTTTTCAGGGTTTTGCGTGCCTTGGAACCCTAATTCATTTCGGGAAGTTTCCTTGGAGTTCTGA

mRNA sequence

ATGTGTCAGAAGGGCTCCCCACCTACGCAACTATGCGTGCATACAAACTTGCTTAAGAGGAGGAGATGCGTGCTCTCTGCCACATGCCTCCTGGTCAAAACAGATTCTCCACCAATTCTGGAGCTCTCCGTTGCCATCGCAGATCCTCGTCGTGGACCGATTCCGACCGCCGTCACTCTGTTTCACGCAATTCCTCTCTTTGTTCCGTTTTGCCGTTTCTCCTCATCGCCGGCGCCGGGACCGGGACCCTGCTCTGCCCTTCAATACCCTCCCATTACAGCCCCATCATCCGCCGTTCTCCGACACCTTCCAGTGATTAGGCCGTTCCAAGTTTCTGGGTTTTGCGTGCCTTGGAACCCTAATTCATTTCGGGAAGTTTCCTTGGAGTTCTGA

Coding sequence (CDS)

ATGTGTCAGAAGGGCTCCCCACCTACGCAACTATGCGTGCATACAAACTTGCTTAAGAGGAGGAGATGCGTGCTCTCTGCCACATGCCTCCTGGTCAAAACAGATTCTCCACCAATTCTGGAGCTCTCCGTTGCCATCGCAGATCCTCGTCGTGGACCGATTCCGACCGCCGTCACTCTGTTTCACGCAATTCCTCTCTTTGTTCCGTTTTGCCGTTTCTCCTCATCGCCGGCGCCGGGACCGGGACCCTGCTCTGCCCTTCAATACCCTCCCATTACAGCCCCATCATCCGCCGTTCTCCGACACCTTCCAGTGATTAGGCCGTTCCAAGTTTCTGGGTTTTGCGTGCCTTGGAACCCTAATTCATTTCGGGAAGTTTCCTTGGAGTTCTGA

Protein sequence

MCQKGSPPTQLCVHTNLLKRRRCVLSATCLLVKTDSPPILELSVAIADPRRGPIPTAVTLFHAIPLFVPFCRFSSSPAPGPGPCSALQYPPITAPSSAVLRHLPVIRPFQVSGFCVPWNPNSFREVSLEF

Homology

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BLAST of Csor.00g106540 vs. NCBI nr
Match: KAG6573529.1 (hypothetical protein SDJN03_27416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274 bits (700), Expect = 6.76e-93
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MCQKGSPPTQLCVHTNLLKRRRCVLSATCLLVKTDSPPILELSVAIADPRRGPIPTAVTL 60
           MCQKGSPPTQLCVHTNLLKRRRCVLSATCLLVKTDSPPILELSVAIADPRRGPIPTAVTL
Sbjct: 1   MCQKGSPPTQLCVHTNLLKRRRCVLSATCLLVKTDSPPILELSVAIADPRRGPIPTAVTL 60

Query: 61  FHAIPLFVPFCRFSSSPAPGPGPCSALQYPPITAPSSAVLRHLPVIRPFQVSGFCVPWNP 120
           FHAIPLFVPFCRFSSSPAPGPGPCSALQYPPITAPSSAVLRHLPVIRPFQVSGFCVPWNP
Sbjct: 61  FHAIPLFVPFCRFSSSPAPGPGPCSALQYPPITAPSSAVLRHLPVIRPFQVSGFCVPWNP 120

Query: 121 NSFREVSLEF 130
           NSFREVSLEF
Sbjct: 121 NSFREVSLEF 130

The following BLAST results are available for this feature:

BLAST of Csor.00g106540 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g106540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573529.1	6.76e-93	100.00	hypothetical protein SDJN03_27416, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g106540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g106540 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g106540.m01	Csor.00g106540.m01	mRNA