Csor.00g073080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g073080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pectin lyase-like superfamily protein
Location	Csor_Chr02: 3853192 .. 3853641 (+)
RNA-Seq Expression	Csor.00g073080
Synteny	Csor.00g073080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGGGAATATCAAACATAACGATCGAGGATTTAAACATTTGGGATTCAGCAGCCGGTGTTCGAATCAAATCGGACCAAGGAAGAGGAGGGTACATTGCAAATATTAGTATAAGCAACTTTGTAATGAACAGAGTAAAGATGGCTATAAGGTTCAGCAAGGGTTCAAACGACCATCCGGACGAAGAATGGGATCCAAAGGCAGTTCCCATAGTTAAAGGTATTTTCATAAGCAATATCACGAGCTTAAATTCAACAAAGGCTCCTGTTCTGAATGGCATAGAGGGCACATTATTCGATGGTGTGTGTATGAAAAATGTCACTATTCTTGGTCTCGCTCCCTCCGCAAAGTGGCACTGTGCTTTCGTGTCGGGCTTTAGCAGTGCGGTGTTTCCTACGCCATGTCCTCAGCTGCAAAACATCACGGTCTCATCGATGTGCTCGTGA

mRNA sequence

ATGTCGGGGGGAATATCAAACATAACGATCGAGGATTTAAACATTTGGGATTCAGCAGCCGGTGTTCGAATCAAATCGGACCAAGGAAGAGGAGGGTACATTGCAAATATTAGTATAAGCAACTTTGTAATGAACAGAGTAAAGATGGCTATAAGGTTCAGCAAGGGTTCAAACGACCATCCGGACGAAGAATGGGATCCAAAGGCAGTTCCCATAGTTAAAGGTATTTTCATAAGCAATATCACGAGCTTAAATTCAACAAAGGCTCCTGTTCTGAATGGCATAGAGGGCACATTATTCGATGGTGTGTGTATGAAAAATGTCACTATTCTTGGTCTCGCTCCCTCCGCAAAGTGGCACTGTGCTTTCGTGTCGGGCTTTAGCAGTGCGGTGTTTCCTACGCCATGTCCTCAGCTGCAAAACATCACGGTCTCATCGATGTGCTCGTGA

Coding sequence (CDS)

ATGTCGGGGGGAATATCAAACATAACGATCGAGGATTTAAACATTTGGGATTCAGCAGCCGGTGTTCGAATCAAATCGGACCAAGGAAGAGGAGGGTACATTGCAAATATTAGTATAAGCAACTTTGTAATGAACAGAGTAAAGATGGCTATAAGGTTCAGCAAGGGTTCAAACGACCATCCGGACGAAGAATGGGATCCAAAGGCAGTTCCCATAGTTAAAGGTATTTTCATAAGCAATATCACGAGCTTAAATTCAACAAAGGCTCCTGTTCTGAATGGCATAGAGGGCACATTATTCGATGGTGTGTGTATGAAAAATGTCACTATTCTTGGTCTCGCTCCCTCCGCAAAGTGGCACTGTGCTTTCGTGTCGGGCTTTAGCAGTGCGGTGTTTCCTACGCCATGTCCTCAGCTGCAAAACATCACGGTCTCATCGATGTGCTCGTGA

Protein sequence

MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHPDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWHCAFVSGFSSAVFPTPCPQLQNITVSSMCS

Homology

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BLAST of Csor.00g073080 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-23
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGI ++  ED+   +S +G+RIK+  GRGGY+ +I +    M  +K A   +     H
Sbjct: 315 MSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSH 374

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAK-- 120
            D  +DPKA P+++GI   ++ + N + A  L GI    F G+C+ NVTI  LA  AK  
Sbjct: 375 ADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTI-HLAAKAKKV 434

Query: 121 -WHCAFVSGFSSAVFPTPCPQL--QNITVSSMCS 150
            W C  V G SS V PTPC  L  Q    +S+C+
Sbjct: 435 PWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCN 467

[Close]

BLAST of Csor.00g073080 vs. ExPASy Swiss-Prot
Match: O23147 (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 36/115 (31.30%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 5   ISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHPDEE 64
           +S I ++     +S  GVRIK+ QG  G   NI   N  M  VK  I   +   D  D+ 
Sbjct: 303 VSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCD-KDKC 362

Query: 65  WDPKAVPIVKGIFISNITSLNSTKAPV-LNGIEGTLFDGVCMKNVTILGLAPSAK 119
            D ++   VK +   NI+  ++T   + LN  E     G+ ++NV I G   S K
Sbjct: 363 EDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKIKGGTASCK 416

[Close]

BLAST of Csor.00g073080 vs. ExPASy Swiss-Prot
Match: P18192 (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 35/107 (32.71%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 4   GISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHPDE 63
           G+ N+T++DL +  +  G+RIKSD+   G +  +  SN VM  V   I       D   E
Sbjct: 287 GVYNVTVDDLIMTGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVI-----DTVYE 346

Query: 64  EWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTI 111
           + +   VP    I   +ITS  +    VLNG        V MKNV +
Sbjct: 347 KKEGSNVPDWSDITFKDITS-QTKGVVVLNGENAKKPIEVTMKNVKL 387

[Close]

BLAST of Csor.00g073080 vs. ExPASy Swiss-Prot
Match: P26509 (Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 34/107 (31.78%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 4   GISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHPDE 63
           G+ N+T++DL +  +  G+RIKSD+   G +  +  SN VM  V   I       D   E
Sbjct: 287 GVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVI-----DTVYE 346

Query: 64  EWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTI 111
           + +   VP    I   ++TS  +    VLNG        V MKNV +
Sbjct: 347 KKEGSNVPDWSDITFKDVTS-ETKGVVVLNGENAKKPIEVTMKNVKL 387

[Close]

BLAST of Csor.00g073080 vs. NCBI nr
Match: KAG6605323.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (788), Expect = 1.06e-105
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149

[Close]

BLAST of Csor.00g073080 vs. NCBI nr
Match: KAG7035281.1 (putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308 bits (788), Expect = 1.35e-102
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 212 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 271

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 272 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 331

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 332 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 360

[Close]

BLAST of Csor.00g073080 vs. NCBI nr
Match: XP_023533571.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308 bits (788), Expect = 4.36e-101
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 325 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 384

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 385 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 444

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 445 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 473

[Close]

BLAST of Csor.00g073080 vs. NCBI nr
Match: XP_022946971.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 306 bits (785), Expect = 1.24e-100
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 325 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 384

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVP+VKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 385 PDEEWDPKAVPMVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 444

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 445 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 473

[Close]

BLAST of Csor.00g073080 vs. NCBI nr
Match: XP_023007164.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 306 bits (785), Expect = 1.27e-100
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITI+DLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 326 MSGGISNITIDDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 385

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 386 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 445

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 446 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 474

[Close]

BLAST of Csor.00g073080 vs. ExPASy TrEMBL
Match: A0A6J1G526 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111450990 PE=3 SV=1)

HSP 1 Score: 306 bits (785), Expect = 5.99e-101
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 325 MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 384

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVP+VKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 385 PDEEWDPKAVPMVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 444

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 445 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 473

[Close]

BLAST of Csor.00g073080 vs. ExPASy TrEMBL
Match: A0A6J1L474 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111499740 PE=3 SV=1)

HSP 1 Score: 306 bits (785), Expect = 6.17e-101
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITI+DLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH
Sbjct: 326 MSGGISNITIDDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 385

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH
Sbjct: 386 PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 445

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFSSAVFPTPCPQLQNITVSSMCS
Sbjct: 446 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 474

[Close]

BLAST of Csor.00g073080 vs. ExPASy TrEMBL
Match: A0A5D3BTE0 (Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00570 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 5.46e-90
Identity = 127/149 (85.23%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SI+NFVMNRVKMAIRFS+GSNDH
Sbjct: 157 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSITNFVMNRVKMAIRFSRGSNDH 216

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDE++DPKAVP VKGIFI+N+ SLNSTKAPVL+GI GT +DGVCMKNVTILGLAPSAKWH
Sbjct: 217 PDEQFDPKAVPKVKGIFITNLMSLNSTKAPVLDGIAGTSYDGVCMKNVTILGLAPSAKWH 276

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFS++VFP PCPQLQN T S +CS
Sbjct: 277 CAFVSGFSTSVFPMPCPQLQNTTFSPLCS 305

[Close]

BLAST of Csor.00g073080 vs. ExPASy TrEMBL
Match: A0A6J1DQZ6 (probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111023522 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 1.04e-88
Identity = 126/149 (84.56%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SISNFVMNRVK+ IRFS+GSNDH
Sbjct: 266 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSISNFVMNRVKVPIRFSRGSNDH 325

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PD++WDPKAVP VKG+FISN+ SLNSTKAPVL+GI+G  FDG+CMKNVTILGLAPS KWH
Sbjct: 326 PDDKWDPKAVPRVKGVFISNVVSLNSTKAPVLDGIKGASFDGICMKNVTILGLAPSVKWH 385

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFS+AVFPTPC QLQN T SS+CS
Sbjct: 386 CAFVSGFSTAVFPTPCLQLQNDTFSSLCS 414

[Close]

BLAST of Csor.00g073080 vs. ExPASy TrEMBL
Match: A0A0A0LJW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334510 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 1.93e-88
Identity = 128/149 (85.91%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGISNITIEDLN+WDSAAG+RIKSDQGRGGYIAN+SI+NFVMNRVKMAIRFS+GSNDH
Sbjct: 322 MSGGISNITIEDLNVWDSAAGIRIKSDQGRGGYIANVSITNFVMNRVKMAIRFSRGSNDH 381

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
           PDE++DPKAVP VKGIFI+N+ SLNSTKAPVL GI GT +DGVCMKNVTILGL PSAKWH
Sbjct: 382 PDEQFDPKAVPKVKGIFITNLMSLNSTKAPVLYGIAGTSYDGVCMKNVTILGLTPSAKWH 441

Query: 121 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 149
           CAFVSGFS++VFPTPCPQLQN T SS+CS
Sbjct: 442 CAFVSGFSTSVFPTPCPQLQNTTFSSLCS 470

[Close]

BLAST of Csor.00g073080 vs. TAIR 10
Match: AT4G33440.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 6.4e-52
Identity = 89/139 (64.03%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGI NIT+ED+++WDSAAG+RIK+D+GRGGYI+NI+ +N ++ +VK+ IRFS GSNDH
Sbjct: 324 MSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSNDH 383

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWH 120
            D++WDPKA+P VKGI+ISN+ SLNS KAP+L G+EGT F  VC++NVT+LGL  + KW 
Sbjct: 384 SDDKWDPKALPRVKGIYISNVVSLNSRKAPMLLGVEGTSFQDVCLRNVTLLGLPKTEKWK 443

Query: 121 CAFVSGFSSAVFPTPCPQL 140
           C  VSG++S VFP  CPQL
Sbjct: 444 CKDVSGYASDVFPLSCPQL 462

[Close]

BLAST of Csor.00g073080 vs. TAIR 10
Match: AT4G23820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-29
Identity = 61/149 (40.94%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 2   SGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHP 61
           SGGI NI  E + + +   GV IK++ GRGGYI NI IS+  ++  K  I+ +  + DHP
Sbjct: 293 SGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHP 352

Query: 62  DEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAK-WH 121
           DE ++P A+P+VKGI I N+  +N   A  + G++G+ F G+C+  + + G   S K W 
Sbjct: 353 DENYNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKTWK 412

Query: 122 CAFVSGFSSAVFPTPCPQLQNITVSSMCS 150
           C+ VSG S  V P PC +L+    S++CS
Sbjct: 413 CSDVSGTSLKVSPWPCSELRTTGGSNLCS 441

[Close]

BLAST of Csor.00g073080 vs. TAIR 10
Match: AT5G41870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 2   SGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDHP 61
           SGGI N+T+E++ +++S  G+ IK++ GRGG I  I+IS   + +V+  I+ S  + DHP
Sbjct: 298 SGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDHP 357

Query: 62  DEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAKWHC 121
           D++++  A+PIV+GI I N+  +   +A ++ G++ + F  +C  NVT+ G   S  W C
Sbjct: 358 DDKFNTSALPIVRGITIKNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTGTKRSPIWKC 417

Query: 122 AFVSGFSSAVFPTPCPQLQNIT 144
           + V G +  V PTPCP+L   T
Sbjct: 418 SDVVGAADKVNPTPCPELSATT 439

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BLAST of Csor.00g073080 vs. TAIR 10
Match: AT3G62110.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-27
Identity = 59/135 (43.70%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGG+S I I+DL++++S  G+RIK+  GRGGY+ N+ I N  ++ VK AIRF+    +H
Sbjct: 295 MSGGVSEIYIKDLHLFNSNTGIRIKTSAGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEH 354

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTILGLAPSAK-- 120
           PDE++DPKA+P ++ I   N+       A +L GIEG +F  +C  NVT+     S K  
Sbjct: 355 PDEKYDPKALPAIEKITFENVNGDGIGVAGLLEGIEGDVFKNICFLNVTLRVKKNSKKSP 414

Query: 121 WHCAFVSGFSSAVFP 134
           W C+ V G+S  V P
Sbjct: 415 WECSNVRGYSQWVSP 429

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BLAST of Csor.00g073080 vs. TAIR 10
Match: AT3G06770.3 (Pectin lyase-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-24
Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MSGGISNITIEDLNIWDSAAGVRIKSDQGRGGYIANISISNFVMNRVKMAIRFSKGSNDH 60
           MSGGIS++ +++ +I  S  G+  ++ +GRGGYI  I ISN  M R+  AI  +     H
Sbjct: 226 MSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIVANGSFGSH 285

Query: 61  PDEEWDPKAVPIVKGIFISNITSLNSTKAPVLNGIEGTLFDGVCMKNVTI-LGLAPSAKW 120
           PD+++D  A+P+V  I +SNI+  N   A  L GI+ + F  V + NV++ +    S  W
Sbjct: 286 PDDKYDVNALPLVSHIRLSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSW 345

Query: 121 HCAFVSGFSSAVFPTPCPQLQ 141
            C++V G S +V P PCP+L+
Sbjct: 346 QCSYVYGSSESVIPEPCPELK 366

The following BLAST results are available for this feature:

BLAST of Csor.00g073080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	2.7e-23	39.61	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
O23147	3.4e-05	31.30	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]
P18192	1.7e-04	32.71	Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 G...	[more]
P26509	1.7e-04	31.78	Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=...	[more]

BLAST of Csor.00g073080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605323.1	1.06e-105	100.00	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035281.1	1.35e-102	100.00	putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533571.1	4.36e-101	100.00	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_022946971.1	1.24e-100	99.33	probable polygalacturonase [Cucurbita moschata]	[more]
XP_023007164.1	1.27e-100	99.33	probable polygalacturonase [Cucurbita maxima]	[more]

BLAST of Csor.00g073080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G526	5.99e-101	99.33	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111450990 PE=3 SV...	[more]
A0A6J1L474	6.17e-101	99.33	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111499740 PE=3 SV=1	[more]
A0A5D3BTE0	5.46e-90	85.23	Putative polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1DQZ6	1.04e-88	84.56	probable polygalacturonase OS=Momordica charantia OX=3673 GN=LOC111023522 PE=3 S...	[more]
A0A0A0LJW9	1.93e-88	85.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334510 PE=3 SV=1	[more]

BLAST of Csor.00g073080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33440.1	6.4e-52	64.03	Pectin lyase-like superfamily protein	[more]
AT4G23820.1	2.6e-29	40.94	Pectin lyase-like superfamily protein	[more]
AT5G41870.1	1.0e-28	38.73	Pectin lyase-like superfamily protein	[more]
AT3G62110.1	1.9e-27	43.70	Pectin lyase-like superfamily protein	[more]
AT3G06770.3	3.3e-24	39.01	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 5..124 e-value: 3.5E-12 score: 46.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..127 e-value: 2.8E-23 score: 84.4
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 1..148
None	No IPR available	PANTHER	PTHR31339:SF4	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 1..148
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g073080.m01	Csor.00g073080.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004650	polygalacturonase activity