Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATCAAGACGAGAATGAATTTGGGAATCTAGGACATACTCATCTGGGAGCTTCTGCTCTCCTCTGGAAAGAGTTTATATATATATATATATATATATCTATATATATATATATATATATATATATCTCGAGAGGTGAGGAGAGGGAGGAAGTAGCTCGACTCGAAGAGGAGAGGGCAGCCCCCCGCTTGATCGATTTCTCGCAATCAGAGGAAGATCTCTCATTTGATGACCCTAAACAAGAAGAAGTTGCTCTCGATGTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCAAGAACAGCAGCCCTTGGATAA
mRNA sequence
ATGGTGGATCAAGACGAGAATGAATTTGGGAATCTAGGACATACTCATCTGGGAGCTTCTGCTCTCCTCTGGAAAGAGTTTATATATATATATATATATATATCTATATATATATATATATATATATATATCTCGAGAGGTGAGGAGAGGGAGGAAGTAGCTCGACTCGAAGAGGAGAGGGCAGCCCCCCGCTTGATCGATTTCTCGCAATCAGAGGAAGATCTCTCATTTGATGACCCTAAACAAGAAGAAGTTGCTCTCGATGTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCAAGAACAGCAGCCCTTGGATAA
Coding sequence (CDS)
ATGGTGGATCAAGACGAGAATGAATTTGGGAATCTAGGACATACTCATCTGGGAGCTTCTGCTCTCCTCTGGAAAGAGTTTATATATATATATATATATATATCTATATATATATATATATATATATATATCTCGAGAGGTGAGGAGAGGGAGGAAGTAGCTCGACTCGAAGAGGAGAGGGCAGCCCCCCGCTTGATCGATTTCTCGCAATCAGAGGAAGATCTCTCATTTGATGACCCTAAACAAGAAGAAGTTGCTCTCGATGTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCAAGAACAGCAGCCCTTGGATAA
Protein sequence
MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERAAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG
Homology
BLAST of Csor.00g066770 vs. NCBI nr
Match:
KAG6601722.1 (hypothetical protein SDJN03_06955, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 215 bits (547), Expect = 2.90e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER
Sbjct: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG
Sbjct: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
BLAST of Csor.00g066770 vs. NCBI nr
Match:
KAG6585974.1 (hypothetical protein SDJN03_18707, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 144 bits (364), Expect = 1.61e-42
Identity = 75/106 (70.75%), Postives = 80/106 (75.47%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENE GN HTH ASALLW+EFIYIY I RG+EREEVARL+EER
Sbjct: 1 MVDQDENELGNPEHTHPRASALLWEEFIYIY------------ILRGDEREEVARLKEER 60
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAA 106
APRL DFS+ EEDLSFDDPKQEE LDVR AGKERRGIGCP+ A
Sbjct: 61 VAPRLTDFSELEEDLSFDDPKQEEATLDVRFAGKERRGIGCPKAVA 94
BLAST of Csor.00g066770 vs. NCBI nr
Match:
KAG7022402.1 (hypothetical protein SDJN02_16133, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 140 bits (354), Expect = 3.67e-39
Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 0
Query: 13 GHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERAAPRLIDFSQSE 72
GHTH GASALLW +YIYISRGEEREEVARLEEER APRL DFS+SE
Sbjct: 158 GHTHPGASALLWGR-------------VYIYISRGEEREEVARLEEERVAPRLTDFSESE 217
Query: 73 EDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
EDLSFDDP+QEE ALDVRSAGKERRGIGCPR AALG
Sbjct: 218 EDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG 240
BLAST of Csor.00g066770 vs. NCBI nr
Match:
XP_028115968.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC114313749 [Camellia sinensis])
HSP 1 Score: 109 bits (273), Expect = 1.24e-26
Identity = 63/107 (58.88%), Postives = 65/107 (60.75%), Query Frame = 0
Query: 2 VDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERA 61
VDQDENE GN GHTH GASALLW Y RGE R
Sbjct: 197 VDQDENESGNPGHTHPGASALLWGGVFY--------------RERGESR----------V 256
Query: 62 APRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
APRL DFS+SEEDLS DDP+QE ALDVRSA KERRGIGCPR AA G
Sbjct: 257 APRLTDFSESEEDLSSDDPEQEGAALDVRSAAKERRGIGCPRAAAPG 279
BLAST of Csor.00g066770 vs. NCBI nr
Match:
XP_027185400.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113783458 [Coffea eugenioides])
HSP 1 Score: 78.6 bits (192), Expect = 8.27e-15
Identity = 50/96 (52.08%), Postives = 52/96 (54.17%), Query Frame = 0
Query: 2 VDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERA 61
VDQDENE GN GHTH GA LLW Y RGE R
Sbjct: 197 VDQDENESGNPGHTHTGAX-LLWGGVFY--------------RERGESR----------V 256
Query: 62 APRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERR 97
A RL DFS+SEEDLS DDP+QE ALDVRS KERR
Sbjct: 257 ASRLTDFSESEEDLSSDDPEQEGAALDVRSTAKERR 267
BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match:
A0A5N5IX32 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 6.95e-12
Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENE GN GHTH GASALLW ++I R E R
Sbjct: 1 MVDQDENESGNPGHTHPGASALLWGG---------------VFIDR----------EVSR 60
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKER 96
A R DFS+SE+ L P+QE LDVRSA KER
Sbjct: 61 GASRFTDFSESEDHL----PEQEGAVLDVRSAAKER 67
BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match:
A0A5N6L7A8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46072 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.27e-11
Identity = 44/94 (46.81%), Postives = 48/94 (51.06%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENE GN GHTH GA ALLW +I RG+ R
Sbjct: 207 MVDQDENESGNPGHTHPGAYALLWGGG---------------FIERGKSR---------- 266
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGK 94
A RL D S+SEEDLS D P+ E ALD RS K
Sbjct: 267 VASRLTDLSESEEDLSSDHPEHEGAALDTRSYAK 275
BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match:
A0A5N6L780 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46116 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 6.60e-10
Identity = 41/88 (46.59%), Postives = 45/88 (51.14%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENE GN GHTH GA ALLW +I RG+ R
Sbjct: 154 MVDQDENESGNPGHTHPGAYALLWGGG---------------FIERGKSR---------- 213
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALD 88
A RL D S+SEEDLS D P+ E ALD
Sbjct: 214 VASRLTDLSESEEDLSSDHPEHEGAALD 216
BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match:
A0A5N6LCQ5 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44274 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 7.06e-10
Identity = 41/88 (46.59%), Postives = 45/88 (51.14%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENE GN GHTH GA ALLW +I RG+ R
Sbjct: 207 MVDQDENESGNPGHTHPGAYALLWGGG---------------FIERGKSR---------- 266
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALD 88
A RL D S+SEEDLS D P+ E ALD
Sbjct: 267 VASRLTDLSESEEDLSSDHPEHEGAALD 269
BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match:
A0A6N2KAR6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS60884 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.66e-07
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 0
Query: 1 MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
MVDQDENE GN GHTH GASALLW ++I R E R
Sbjct: 1 MVDQDENESGNPGHTHPGASALLWGG---------------VFIDR----------EVSR 60
Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVR 90
A R DFS+SE+ L P+QE LD R
Sbjct: 61 GASRFTDFSESEDHL----PEQEGAVLDER 61
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6601722.1 | 2.90e-70 | 100.00 | hypothetical protein SDJN03_06955, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6585974.1 | 1.61e-42 | 70.75 | hypothetical protein SDJN03_18707, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7022402.1 | 3.67e-39 | 76.04 | hypothetical protein SDJN02_16133, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_028115968.1 | 1.24e-26 | 58.88 | LOW QUALITY PROTEIN: uncharacterized protein LOC114313749 [Camellia sinensis] | [more] |
XP_027185400.1 | 8.27e-15 | 52.08 | LOW QUALITY PROTEIN: uncharacterized protein LOC113783458 [Coffea eugenioides] | [more] |
Match Name | E-value | Identity | Description | |
A0A5N5IX32 | 6.95e-12 | 46.88 | Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1 | [more] |
A0A5N6L7A8 | 1.27e-11 | 46.81 | Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46072 PE=4 SV=1 | [more] |
A0A5N6L780 | 6.60e-10 | 46.59 | Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46116 PE=4 SV=1 | [more] |
A0A5N6LCQ5 | 7.06e-10 | 46.59 | Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44274 PE=4 SV=1 | [more] |
A0A6N2KAR6 | 2.66e-07 | 43.33 | Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS60884 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |