Csor.00g066770 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g066770
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 11880866 .. 11881192 (+)
RNA-Seq ExpressionCsor.00g066770
SyntenyCsor.00g066770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATCAAGACGAGAATGAATTTGGGAATCTAGGACATACTCATCTGGGAGCTTCTGCTCTCCTCTGGAAAGAGTTTATATATATATATATATATATATCTATATATATATATATATATATATATATCTCGAGAGGTGAGGAGAGGGAGGAAGTAGCTCGACTCGAAGAGGAGAGGGCAGCCCCCCGCTTGATCGATTTCTCGCAATCAGAGGAAGATCTCTCATTTGATGACCCTAAACAAGAAGAAGTTGCTCTCGATGTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCAAGAACAGCAGCCCTTGGATAA

mRNA sequence

ATGGTGGATCAAGACGAGAATGAATTTGGGAATCTAGGACATACTCATCTGGGAGCTTCTGCTCTCCTCTGGAAAGAGTTTATATATATATATATATATATATCTATATATATATATATATATATATATATCTCGAGAGGTGAGGAGAGGGAGGAAGTAGCTCGACTCGAAGAGGAGAGGGCAGCCCCCCGCTTGATCGATTTCTCGCAATCAGAGGAAGATCTCTCATTTGATGACCCTAAACAAGAAGAAGTTGCTCTCGATGTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCAAGAACAGCAGCCCTTGGATAA

Coding sequence (CDS)

ATGGTGGATCAAGACGAGAATGAATTTGGGAATCTAGGACATACTCATCTGGGAGCTTCTGCTCTCCTCTGGAAAGAGTTTATATATATATATATATATATATCTATATATATATATATATATATATATATCTCGAGAGGTGAGGAGAGGGAGGAAGTAGCTCGACTCGAAGAGGAGAGGGCAGCCCCCCGCTTGATCGATTTCTCGCAATCAGAGGAAGATCTCTCATTTGATGACCCTAAACAAGAAGAAGTTGCTCTCGATGTGAGATCCGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCAAGAACAGCAGCCCTTGGATAA

Protein sequence

MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERAAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG
Homology
BLAST of Csor.00g066770 vs. NCBI nr
Match: KAG6601722.1 (hypothetical protein SDJN03_06955, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (547), Expect = 2.90e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
           MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER
Sbjct: 1   MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60

Query: 61  AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
           AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG
Sbjct: 61  AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108

BLAST of Csor.00g066770 vs. NCBI nr
Match: KAG6585974.1 (hypothetical protein SDJN03_18707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144 bits (364), Expect = 1.61e-42
Identity = 75/106 (70.75%), Postives = 80/106 (75.47%), Query Frame = 0

Query: 1   MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
           MVDQDENE GN  HTH  ASALLW+EFIYIY            I RG+EREEVARL+EER
Sbjct: 1   MVDQDENELGNPEHTHPRASALLWEEFIYIY------------ILRGDEREEVARLKEER 60

Query: 61  AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAA 106
            APRL DFS+ EEDLSFDDPKQEE  LDVR AGKERRGIGCP+  A
Sbjct: 61  VAPRLTDFSELEEDLSFDDPKQEEATLDVRFAGKERRGIGCPKAVA 94

BLAST of Csor.00g066770 vs. NCBI nr
Match: KAG7022402.1 (hypothetical protein SDJN02_16133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140 bits (354), Expect = 3.67e-39
Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 0

Query: 13  GHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERAAPRLIDFSQSE 72
           GHTH GASALLW               +YIYISRGEEREEVARLEEER APRL DFS+SE
Sbjct: 158 GHTHPGASALLWGR-------------VYIYISRGEEREEVARLEEERVAPRLTDFSESE 217

Query: 73  EDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
           EDLSFDDP+QEE ALDVRSAGKERRGIGCPR AALG
Sbjct: 218 EDLSFDDPEQEEAALDVRSAGKERRGIGCPRAAALG 240

BLAST of Csor.00g066770 vs. NCBI nr
Match: XP_028115968.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC114313749 [Camellia sinensis])

HSP 1 Score: 109 bits (273), Expect = 1.24e-26
Identity = 63/107 (58.88%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 2   VDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERA 61
           VDQDENE GN GHTH GASALLW    Y                RGE R           
Sbjct: 197 VDQDENESGNPGHTHPGASALLWGGVFY--------------RERGESR----------V 256

Query: 62  APRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERRGIGCPRTAALG 108
           APRL DFS+SEEDLS DDP+QE  ALDVRSA KERRGIGCPR AA G
Sbjct: 257 APRLTDFSESEEDLSSDDPEQEGAALDVRSAAKERRGIGCPRAAAPG 279

BLAST of Csor.00g066770 vs. NCBI nr
Match: XP_027185400.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113783458 [Coffea eugenioides])

HSP 1 Score: 78.6 bits (192), Expect = 8.27e-15
Identity = 50/96 (52.08%), Postives = 52/96 (54.17%), Query Frame = 0

Query: 2   VDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEERA 61
           VDQDENE GN GHTH GA  LLW    Y                RGE R           
Sbjct: 197 VDQDENESGNPGHTHTGAX-LLWGGVFY--------------RERGESR----------V 256

Query: 62  APRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKERR 97
           A RL DFS+SEEDLS DDP+QE  ALDVRS  KERR
Sbjct: 257 ASRLTDFSESEEDLSSDDPEQEGAALDVRSTAKERR 267

BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match: A0A5N5IX32 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.95e-12
Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 1  MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
          MVDQDENE GN GHTH GASALLW                 ++I R          E  R
Sbjct: 1  MVDQDENESGNPGHTHPGASALLWGG---------------VFIDR----------EVSR 60

Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGKER 96
           A R  DFS+SE+ L    P+QE   LDVRSA KER
Sbjct: 61 GASRFTDFSESEDHL----PEQEGAVLDVRSAAKER 67

BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match: A0A5N6L7A8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46072 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.27e-11
Identity = 44/94 (46.81%), Postives = 48/94 (51.06%), Query Frame = 0

Query: 1   MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
           MVDQDENE GN GHTH GA ALLW                  +I RG+ R          
Sbjct: 207 MVDQDENESGNPGHTHPGAYALLWGGG---------------FIERGKSR---------- 266

Query: 61  AAPRLIDFSQSEEDLSFDDPKQEEVALDVRSAGK 94
            A RL D S+SEEDLS D P+ E  ALD RS  K
Sbjct: 267 VASRLTDLSESEEDLSSDHPEHEGAALDTRSYAK 275

BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match: A0A5N6L780 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46116 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.60e-10
Identity = 41/88 (46.59%), Postives = 45/88 (51.14%), Query Frame = 0

Query: 1   MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
           MVDQDENE GN GHTH GA ALLW                  +I RG+ R          
Sbjct: 154 MVDQDENESGNPGHTHPGAYALLWGGG---------------FIERGKSR---------- 213

Query: 61  AAPRLIDFSQSEEDLSFDDPKQEEVALD 88
            A RL D S+SEEDLS D P+ E  ALD
Sbjct: 214 VASRLTDLSESEEDLSSDHPEHEGAALD 216

BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match: A0A5N6LCQ5 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44274 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.06e-10
Identity = 41/88 (46.59%), Postives = 45/88 (51.14%), Query Frame = 0

Query: 1   MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
           MVDQDENE GN GHTH GA ALLW                  +I RG+ R          
Sbjct: 207 MVDQDENESGNPGHTHPGAYALLWGGG---------------FIERGKSR---------- 266

Query: 61  AAPRLIDFSQSEEDLSFDDPKQEEVALD 88
            A RL D S+SEEDLS D P+ E  ALD
Sbjct: 267 VASRLTDLSESEEDLSSDHPEHEGAALD 269

BLAST of Csor.00g066770 vs. ExPASy TrEMBL
Match: A0A6N2KAR6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS60884 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.66e-07
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 0

Query: 1  MVDQDENEFGNLGHTHLGASALLWKEFIYIYIYISIYIYIYIYISRGEEREEVARLEEER 60
          MVDQDENE GN GHTH GASALLW                 ++I R          E  R
Sbjct: 1  MVDQDENESGNPGHTHPGASALLWGG---------------VFIDR----------EVSR 60

Query: 61 AAPRLIDFSQSEEDLSFDDPKQEEVALDVR 90
           A R  DFS+SE+ L    P+QE   LD R
Sbjct: 61 GASRFTDFSESEDHL----PEQEGAVLDER 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6601722.12.90e-70100.00hypothetical protein SDJN03_06955, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585974.11.61e-4270.75hypothetical protein SDJN03_18707, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7022402.13.67e-3976.04hypothetical protein SDJN02_16133, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_028115968.11.24e-2658.88LOW QUALITY PROTEIN: uncharacterized protein LOC114313749 [Camellia sinensis][more]
XP_027185400.18.27e-1552.08LOW QUALITY PROTEIN: uncharacterized protein LOC113783458 [Coffea eugenioides][more]
Match NameE-valueIdentityDescription
A0A5N5IX326.95e-1246.88Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1[more]
A0A5N6L7A81.27e-1146.81Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46072 PE=4 SV=1[more]
A0A5N6L7806.60e-1046.59Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46116 PE=4 SV=1[more]
A0A5N6LCQ57.06e-1046.59Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44274 PE=4 SV=1[more]
A0A6N2KAR62.66e-0743.33Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS60884 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g066770.m01Csor.00g066770.m01mRNA