Csor.00g026390 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g026390
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 5513638 .. 5513922 (-)
RNA-Seq Expression	Csor.00g026390
Synteny	Csor.00g026390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCCACACGTTTGAAGTCACATACCACGAGAACCACACGTGTGCATGTCCCAGTCTATTCCTCCTCCACCGGGTGGATTTCGACGGAGTTCGTTGGTTCAGCAAGTGGGTCGGCCTCCGGTGGCAGAAGCGGCTATCCACCGCAGTACGGTACGGCCAAGACGTCGCCGACCGGTAAATGGGCAATACCGGCGGTAGGAAATAATTTGGACTCTATTTTCGGCGCTTTATGTGGCGGCAATCACCAACACAAGTGGGAGGAAGACGACAAGAAGAATTAG

mRNA sequence

ATGATCCCCACACGTTTGAAGTCACATACCACGAGAACCACACGTGTGCATGTCCCAGTCTATTCCTCCTCCACCGGGTGGATTTCGACGGAGTTCGTTGGTTCAGCAAGTGGGTCGGCCTCCGGTGGCAGAAGCGGCTATCCACCGCAGTACGGTACGGCCAAGACGTCGCCGACCGGTAAATGGGCAATACCGGCGGTAGGAAATAATTTGGACTCTATTTTCGGCGCTTTATGTGGCGGCAATCACCAACACAAGTGGGAGGAAGACGACAAGAAGAATTAG

Coding sequence (CDS)

ATGATCCCCACACGTTTGAAGTCACATACCACGAGAACCACACGTGTGCATGTCCCAGTCTATTCCTCCTCCACCGGGTGGATTTCGACGGAGTTCGTTGGTTCAGCAAGTGGGTCGGCCTCCGGTGGCAGAAGCGGCTATCCACCGCAGTACGGTACGGCCAAGACGTCGCCGACCGGTAAATGGGCAATACCGGCGGTAGGAAATAATTTGGACTCTATTTTCGGCGCTTTATGTGGCGGCAATCACCAACACAAGTGGGAGGAAGACGACAAGAAGAATTAG

Protein sequence

MIPTRLKSHTTRTTRVHVPVYSSSTGWISTEFVGSASGSASGGRSGYPPQYGTAKTSPTGKWAIPAVGNNLDSIFGALCGGNHQHKWEEDDKKN

Homology

[Close]

BLAST of Csor.00g026390 vs. NCBI nr
Match: KAG6600872.1 (hypothetical protein SDJN03_06105, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (492), Expect = 2.56e-62
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MIPTRLKSHTTRTTRVHVPVYSSSTGWISTEFVGSASGSASGGRSGYPPQYGTAKTSPTG 60
          MIPTRLKSHTTRTTRVHVPVYSSSTGWISTEFVGSASGSASGGRSGYPPQYGTAKTSPTG
Sbjct: 1  MIPTRLKSHTTRTTRVHVPVYSSSTGWISTEFVGSASGSASGGRSGYPPQYGTAKTSPTG 60

Query: 61 KWAIPAVGNNLDSIFGALCGGNHQHKWEEDDKKN 94
          KWAIPAVGNNLDSIFGALCGGNHQHKWEEDDKKN
Sbjct: 61 KWAIPAVGNNLDSIFGALCGGNHQHKWEEDDKKN 94

The following BLAST results are available for this feature:

BLAST of Csor.00g026390 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g026390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600872.1	2.56e-62	100.00	hypothetical protein SDJN03_06105, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g026390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g026390 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g026390.m01	Csor.00g026390.m01	mRNA