Csor.00g017360 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g017360
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 161120 .. 161437 (+)
RNA-Seq ExpressionCsor.00g017360
SyntenyCsor.00g017360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGAACGTGGGCTTCCACTATGGAGCCGATTTGAGCTCGGCCACCACTGTGGGCCGATTTGGGCCTCTACTATACGCCGGCAGATTTGGGCCTCAACTGTGGGACGGCCGATTCGGCGAGGCCTCCAAATTGGCCGGCTGGTTTGGTCTGGGCCTCCACAGTCGGCCGATTTCGGCTGTGCCTCCACTGTGGGGCGGCCGATTTGGGCTTCCACTGTGGGCCGATTTTGGGCTTACACTATGGGCCGCTTTGGGCCTCCACTATGGGCCGGCCGATTTGGGCTTCAACTGTCGGCCGCTTTGGGCCTCCACTAA

mRNA sequence

ATGGGCGAACGTGGGCTTCCACTATGGAGCCGATTTGAGCTCGGCCACCACTGTGGGCCGATTTGGGCCTCTACTATACGCCGGCAGATTTGGGCCTCAACTGTGGGACGGCCGATTCGGCGAGGCCTCCAAATTGGCCGGCTGGTTTGGTCTGGGCCTCCACAGTCGGCCGATTTCGGCTGTGCCTCCACTGTGGGGCGGCCGATTTGGGCTTCCACTGTGGGCCGATTTTGGGCTTACACTATGGGCCGCTTTGGGCCTCCACTATGGGCCGGCCGATTTGGGCTTCAACTGTCGGCCGCTTTGGGCCTCCACTAA

Coding sequence (CDS)

ATGGGCGAACGTGGGCTTCCACTATGGAGCCGATTTGAGCTCGGCCACCACTGTGGGCCGATTTGGGCCTCTACTATACGCCGGCAGATTTGGGCCTCAACTGTGGGACGGCCGATTCGGCGAGGCCTCCAAATTGGCCGGCTGGTTTGGTCTGGGCCTCCACAGTCGGCCGATTTCGGCTGTGCCTCCACTGTGGGGCGGCCGATTTGGGCTTCCACTGTGGGCCGATTTTGGGCTTACACTATGGGCCGCTTTGGGCCTCCACTATGGGCCGGCCGATTTGGGCTTCAACTGTCGGCCGCTTTGGGCCTCCACTAA

Protein sequence

MGERGLPLWSRFELGHHCGPIWASTIRRQIWASTVGRPIRRGLQIGRLVWSGPPQSADFGCASTVGRPIWASTVGRFWAYTMGRFGPPLWAGRFGLQLSAALGLH
Homology
BLAST of Csor.00g017360 vs. NCBI nr
Match: KAG6583324.1 (hypothetical protein SDJN03_19256, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (583), Expect = 7.45e-76
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MGERGLPLWSRFELGHHCGPIWASTIRRQIWASTVGRPIRRGLQIGRLVWSGPPQSADFG 60
           MGERGLPLWSRFELGHHCGPIWASTIRRQIWASTVGRPIRRGLQIGRLVWSGPPQSADFG
Sbjct: 1   MGERGLPLWSRFELGHHCGPIWASTIRRQIWASTVGRPIRRGLQIGRLVWSGPPQSADFG 60

Query: 61  CASTVGRPIWASTVGRFWAYTMGRFGPPLWAGRFGLQLSAALGLH 105
           CASTVGRPIWASTVGRFWAYTMGRFGPPLWAGRFGLQLSAALGLH
Sbjct: 61  CASTVGRPIWASTVGRFWAYTMGRFGPPLWAGRFGLQLSAALGLH 105

BLAST of Csor.00g017360 vs. NCBI nr
Match: KAG6583325.1 (hypothetical protein SDJN03_19257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 5.77e-18
Identity = 62/156 (39.74%), Postives = 68/156 (43.59%), Query Frame = 0

Query: 1   MGERGLPLWSRF------ELGHHCGPIWASTIRR--------------QIWASTVGRPIR 60
           MG   LPL +        + G H  PIWAST+                Q+WA  +GR   
Sbjct: 59  MGRFRLPLCADLGFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQLWAGRLGRAST 118

Query: 61  RGLQI-----GRLVWSGPPQSADFGCASTVGRPIWASTVGRF-----------------W 105
            G  I     GR VW+GPP SAD GCASTVGRPIWASTVGRF                 W
Sbjct: 119 VGRLIWASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGPIGPSHYGPIW 178

BLAST of Csor.00g017360 vs. NCBI nr
Match: KAG6583398.1 (hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 6.09e-10
Identity = 52/128 (40.62%), Postives = 63/128 (49.22%), Query Frame = 0

Query: 1   MGERGLPLWSRFELGHHCGPIWASTIRRQ--------------IWASTVGR-----PIRR 60
           MG  GLP+W+  ++G H GPIWAST+ R                WAST+GR       R 
Sbjct: 1   MGRHGLPIWA--DMGFHYGPIWASTMGRYGLPLWADIDFKYGPTWASTMGRLGLSLMGRF 60

Query: 61  GLQIG----RLVWSGPPQSADFGCASTVGRPIWASTVGRFWAYTMGRFGPPLWA-GRFGL 104
           GLQ G      +W+       +G       P+ AST+   WA TM R G PLWA GR GL
Sbjct: 61  GLQYGPKWASTLWA--EMGFHYG-------PVRASTLWAEWASTMSRPGLPLWADGRLGL 117

BLAST of Csor.00g017360 vs. NCBI nr
Match: KAG6583443.1 (hypothetical protein SDJN03_19375, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.8 bits (120), Expect = 2.23e-05
Identity = 40/119 (33.61%), Postives = 48/119 (40.34%), Query Frame = 0

Query: 1   MGERGLPLWSRFELGHHCGPIWASTIRRQIWASTVGRPIRRGLQIGRLVWSGPPQSADFG 60
           MG  GL LW+ F  G H GP WAST+ R          +R         + GPP ++ + 
Sbjct: 1   MGRHGLSLWAEF--GFHNGPSWASTMGR----------VRLPQYETFGFYLGPPWASTY- 60

Query: 61  CASTVGRPIWASTVGRFWAYTMGRFGPPLWA--------------GRFGLQLSAALGLH 105
                  P W+      WA TMG  G PLWA              GR GL L A  G H
Sbjct: 61  ------EPTWSFHYEPPWASTMGLLGLPLWADLGFHYGPTWASTMGRLGLPLRAESGFH 100

BLAST of Csor.00g017360 vs. NCBI nr
Match: KAG6583374.1 (hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 51.6 bits (122), Expect = 3.65e-05
Identity = 46/120 (38.33%), Postives = 53/120 (44.17%), Query Frame = 0

Query: 5   GLPLWSRFELGHHCGPIWA--STIRR----------QIWASTVGRPIRRGLQIGRLVWSG 64
           GLPLW+   LG H G IWA  ST+ R            WAST+G         G   W  
Sbjct: 29  GLPLWADMGLGFHFGLIWACASTMDRFWLGLPVWPDLAWASTMGL-------FGLQSW-- 88

Query: 65  PPQSADFGCASTVGRPIWASTVGR----FWAYTMGRFGPPLWA---GRFGLQLSAALGLH 105
               AD G       PIWA  V R     WAY +  +GP +WA   GRFGL   A +G H
Sbjct: 89  ----ADLGFHHG---PIWALVVNRSGLQLWAYLVFHYGP-IWASTMGRFGLHSWADMGFH 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583324.17.45e-76100.00hypothetical protein SDJN03_19256, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583325.15.77e-1839.74hypothetical protein SDJN03_19257, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583398.16.09e-1040.63hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583443.12.23e-0533.61hypothetical protein SDJN03_19375, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583374.13.65e-0538.33hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g017360.m01Csor.00g017360.m01mRNA