Csor.00g017150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g017150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	mitochondrial import inner membrane translocase subunit TIM22-4
Location	Csor_Chr13: 239600 .. 239928 (+)
RNA-Seq Expression	Csor.00g017150
Synteny	Csor.00g017150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGGTTCCGGAGATAGATCGTCGCTCGATCCAGCCAGCTCCGACGACTCGGAGAAGCCTCCAACTGAGGCTATAAGGATCCCCACAGTCGAAGAGATTCGCGGCCAAGATATTTGGAACAACGGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATCGGTAGGTCACCCAGTTTCTTTCTATTTCTTGTTCTGTTTCCTTTAAATACAATTTTCTTGTTCCTTTTTGTGAATTCTTTCCCGCGTTCTTACTCATATACTCTGCTCTAGCTTCTCTGGCCATCAGCGAAACATATCTCCGTTGTTTTGATCGAATACAGCAGTGA

mRNA sequence

ATGGCTTCCGGTTCCGGAGATAGATCGTCGCTCGATCCAGCCAGCTCCGACGACTCGGAGAAGCCTCCAACTGAGGCTATAAGGATCCCCACAGTCGAAGAGATTCGCGGCCAAGATATTTGGAACAACGGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATCGCTTCTCTGGCCATCAGCGAAACATATCTCCGTTGTTTTGATCGAATACAGCAGTGA

Coding sequence (CDS)

ATGGCTTCCGGTTCCGGAGATAGATCGTCGCTCGATCCAGCCAGCTCCGACGACTCGGAGAAGCCTCCAACTGAGGCTATAAGGATCCCCACAGTCGAAGAGATTCGCGGCCAAGATATTTGGAACAACGGTGCAGTTCGCAGTGTTGTTAGTGGAGTCATCGCTTCTCTGGCCATCAGCGAAACATATCTCCGTTGTTTTGATCGAATACAGCAGTGA

Protein sequence

MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVIASLAISETYLRCFDRIQQ

Homology

[Close]

BLAST of Csor.00g017150 vs. ExPASy Swiss-Prot
Match: A2RVP7 (Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana OX=3702 GN=TIM22-1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.2e-05
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 13 PASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 55
          P  + D      + IR+PT+EEIR Q++WNN AVR+V SGV+
Sbjct: 16 PPVASDENSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTSGVM 57

[Close]

BLAST of Csor.00g017150 vs. NCBI nr
Match: KAG6583344.1 (hypothetical protein SDJN03_19276, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (353), Expect = 8.67e-42
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVIASLAIS 60
          MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVIASLAIS
Sbjct: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVIASLAIS 60

Query: 61 ETYLRCFDRIQQ 72
          ETYLRCFDRIQQ
Sbjct: 61 ETYLRCFDRIQQ 72

[Close]

BLAST of Csor.00g017150 vs. NCBI nr
Match: KAG7019114.1 (hypothetical protein SDJN02_18072, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 6.89e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI
Sbjct: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54

[Close]

BLAST of Csor.00g017150 vs. NCBI nr
Match: XP_038893922.1 (mitochondrial import inner membrane translocase subunit TIM22-4-like [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 2.91e-18
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MAS SGDRSSLDP +S+DSE PP E IR+PT+EEIRGQDIWNN AVRSVVSGV+
Sbjct: 1  MASTSGDRSSLDPPTSNDSENPPIEPIRMPTLEEIRGQDIWNNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. NCBI nr
Match: XP_022948292.1 (mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita moschata] >XP_022998612.1 mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita maxima] >XP_023523181.1 mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita pepo subsp. pepo] >KAG6607337.1 Mitochondrial import inner membrane translocase subunit TIM22-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 3.27e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MAS SGD SS DPASS + EKPP E IR+PTVEEIRGQDIWNN AVRSVVSGV+
Sbjct: 1  MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. NCBI nr
Match: KAG7037014.1 (Mitochondrial import inner membrane translocase subunit TIM22-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 3.50e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MAS SGD SS DPASS + EKPP E IR+PTVEEIRGQDIWNN AVRSVVSGV+
Sbjct: 1  MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. ExPASy TrEMBL
Match: A0A6J1K8G7 (mitochondrial import inner membrane translocase subunit TIM22-4 OS=Cucurbita maxima OX=3661 GN=LOC111493200 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.59e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MAS SGD SS DPASS + EKPP E IR+PTVEEIRGQDIWNN AVRSVVSGV+
Sbjct: 1  MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. ExPASy TrEMBL
Match: A0A6J1G8S5 (mitochondrial import inner membrane translocase subunit TIM22-4 OS=Cucurbita moschata OX=3662 GN=LOC111452007 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.59e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MAS SGD SS DPASS + EKPP E IR+PTVEEIRGQDIWNN AVRSVVSGV+
Sbjct: 1  MASSSGDGSSHDPASSSELEKPPLEPIRMPTVEEIRGQDIWNNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. ExPASy TrEMBL
Match: A0A6J1DKY7 (mitochondrial import inner membrane translocase subunit TIM22-4-like OS=Momordica charantia OX=3673 GN=LOC111022051 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.08e-16
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MA+ +G+ SS DP SS+++EKPP E IR+PTVEEIRGQDIWNN AVRSVVSGV+
Sbjct: 1  MATNAGNGSSHDPTSSNEAEKPPIEPIRMPTVEEIRGQDIWNNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. ExPASy TrEMBL
Match: A0A0A0M0Y0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533580 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.81e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 54
          MAS SGD SSLDP +S D++ PP + +R+PTVEEIRGQDIW+N AVRSVVSGV+
Sbjct: 1  MASTSGDGSSLDPPTSSDAQLPPIQPVRMPTVEEIRGQDIWDNCAVRSVVSGVM 54

[Close]

BLAST of Csor.00g017150 vs. ExPASy TrEMBL
Match: A0A6A1UPQ9 (Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Morella rubra OX=262757 GN=CJ030_MR8G010085 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.58e-15
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MASGSGDRSSLDPASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVIAS 56
          MASG+G+ S+ D +SS ++E+PP E IR+PT+EEIRGQDIWNN AVRSVVSGV+ +
Sbjct: 1  MASGAGNESTNDSSSSKEAERPPIEPIRLPTIEEIRGQDIWNNCAVRSVVSGVMGT 56

[Close]

BLAST of Csor.00g017150 vs. TAIR 10
Match: AT3G10110.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.4e-06
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 13 PASSDDSEKPPTEAIRIPTVEEIRGQDIWNNGAVRSVVSGVI 55
          P  + D      + IR+PT+EEIR Q++WNN AVR+V SGV+
Sbjct: 16 PPVASDENSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTSGVM 57

[Close]

BLAST of Csor.00g017150 vs. TAIR 10
Match: AT1G18320.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 29 IPTVEEIRGQDIWNNGAVRSVVSGVI 55
          +PT+EEIR Q++WNN AVR+V SGV+
Sbjct: 1  MPTIEEIRAQEVWNNCAVRAVTSGVM 26

The following BLAST results are available for this feature:

BLAST of Csor.00g017150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVP7	6.2e-05	50.00	Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis t...	[more]

BLAST of Csor.00g017150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583344.1	8.67e-42	100.00	hypothetical protein SDJN03_19276, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019114.1	6.89e-28	100.00	hypothetical protein SDJN02_18072, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038893922.1	2.91e-18	79.63	mitochondrial import inner membrane translocase subunit TIM22-4-like [Benincasa ...	[more]
XP_022948292.1	3.27e-17	79.63	mitochondrial import inner membrane translocase subunit TIM22-4 [Cucurbita mosch...	[more]
KAG7037014.1	3.50e-17	79.63	Mitochondrial import inner membrane translocase subunit TIM22-1 [Cucurbita argyr...	[more]

BLAST of Csor.00g017150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8G7	1.59e-17	79.63	mitochondrial import inner membrane translocase subunit TIM22-4 OS=Cucurbita max...	[more]
A0A6J1G8S5	1.59e-17	79.63	mitochondrial import inner membrane translocase subunit TIM22-4 OS=Cucurbita mos...	[more]
A0A6J1DKY7	7.08e-16	72.22	mitochondrial import inner membrane translocase subunit TIM22-4-like OS=Momordic...	[more]
A0A0A0M0Y0	2.81e-15	70.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533580 PE=4 SV=1	[more]
A0A6A1UPQ9	4.58e-15	66.07	Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Morella rubra...	[more]

BLAST of Csor.00g017150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10110.1	4.4e-06	50.00	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT1G18320.1	1.9e-04	65.38	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g017150.m01	Csor.00g017150.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
biological_process	GO:0071806	protein transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0042721	TIM22 mitochondrial import inner membrane insertion complex
molecular_function	GO:0030943	mitochondrion targeting sequence binding
molecular_function	GO:0008320	protein transmembrane transporter activity