Csor.00g015950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g015950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S15a
Location	Csor_Chr13: 1014661 .. 1015666 (-)
RNA-Seq Expression	Csor.00g015950
Synteny	Csor.00g015950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCGTCCTCCAAAGTGATCATAAAGTTTCTGATGGTGATGCAGAAGCATGGTTCGTTTGTTTTCTTCACCTCCTCTATGGTTTGACTTCATTTTAAACAATTTCTCCGGAGGTTATCTAATTTTATCTTTTTGCTTTAATATTTAGGATATATTGGGGAATTTGAGTATGTTGATGATCATAGATCTGGGAAAATTGTTGTTGAACTGAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCATCCAGACAGGTTAGTGTTCGATCCCTGTTACTTTTGTTAAATGTGATCTTGAAGTTCGTCATTCGAAATTTACCAGTATTGAAAGTTCAGTAATTTGGTTGATGCCAATGACCGAAATTGAGTATCTGTTTCCCTCCCTTTCCTGCTAGGATTGGAAATCCATTCTCCTTGGAAAGGGATTGGAAATCCATTCTCCTTGGGTTTCTTAAATAGTGTCAAAATCAGTGCTTTGAATCATTGCTACTGAACCCATACTTGTTCTATAGAAGTTGAGGCATTTTGAATTCTTTGTCGACACTGGACAAAGTCAAGGGACCCTGAAACCCGCTCCTTAGCTATAACGTTCTAGAGTCATGTTGAACAGACACTAACGTCCAAACATGGGACCTTCATTTTCTTAGATGCCAAATCAGCTACTTGTGTTCTAATACATGAATAGAGTCGTAGAGCCTTTTTAATTTATCTTCTATTTTCACATGTGGGTATTGATTGTATAGAGATTTGTTGAATAACGTGGCCTTCAAAAACATGTTAATGAATAGTTTGATGAAATTGAAATCTGCAGTTTGGATTCATCGTGCTGACAACATCTGCGGGGATTATGGATCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGTAAAGTTCTTGGTTTCTTCTACTGA

mRNA sequence

ATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCGTCCTCCAAAGTGATCATAAAGTTTCTGATGGTGATGCAGAAGCATGGATATATTGGGGAATTTGAGTATGTTGATGATCATAGATCTGGGAAAATTGTTGTTGAACTGAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCATCCAGACAGTTTGGATTCATCGTGCTGACAACATCTGCGGGGATTATGGATCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGTAAAGTTCTTGGTTTCTTCTACTGA

Coding sequence (CDS)

ATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCGTCCTCCAAAGTGATCATAAAGTTTCTGATGGTGATGCAGAAGCATGGATATATTGGGGAATTTGAGTATGTTGATGATCATAGATCTGGGAAAATTGTTGTTGAACTGAACGGCAGGCTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAAATTGAAGGCTGGACTGCTAGGCTGCTCCCATCCAGACAGTTTGGATTCATCGTGCTGACAACATCTGCGGGGATTATGGATCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGTAAAGTTCTTGGTTTCTTCTACTGA

Protein sequence

MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY

Homology

[Close]

BLAST of Csor.00g015950 vs. ExPASy Swiss-Prot
Match: Q9LX88 (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-63
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy Swiss-Prot
Match: P42798 (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 6.2e-63
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy Swiss-Prot
Match: Q00332 (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-62
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           M+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy Swiss-Prot
Match: Q9AT34 (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 237.7 bits (605), Expect = 6.9e-62
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           M+NAEKRGKRQVMIRPSSKV+IKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy Swiss-Prot
Match: O80646 (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-58
Identity = 107/117 (91.45%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           M NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGKIVVELNGRLN CG
Sbjct: 14  MSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KNVGGKVLGFFY
Sbjct: 74  VISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. NCBI nr
Match: KAG6583463.1 (40S ribosomal protein S15a-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG6607209.1 40S ribosomal protein S15a-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241 bits (614), Expect = 3.38e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117

[Close]

BLAST of Csor.00g015950 vs. NCBI nr
Match: XP_022949003.1 (40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965015.1 40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965016.1 40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022970479.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_022970480.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_022997822.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_023520313.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >XP_023520314.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >XP_023523191.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >KAG7019221.1 40S ribosomal protein S15a-1, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7036895.1 40S ribosomal protein S15a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (614), Expect = 5.20e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. NCBI nr
Match: KAE8039001.1 (hypothetical protein FH972_011454 [Carpinus fangiana])

HSP 1 Score: 239 bits (611), Expect = 1.49e-79
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. NCBI nr
Match: XP_022134546.1 (40S ribosomal protein S15a-1 [Momordica charantia] >XP_022143687.1 40S ribosomal protein S15a-1 [Momordica charantia] >XP_022938588.1 40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_022938589.1 40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_022993711.1 40S ribosomal protein S15a-1 [Cucurbita maxima] >XP_023549602.1 40S ribosomal protein S15a-1 [Cucurbita pepo subsp. pepo] >KAG7016248.1 40S ribosomal protein S15a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239 bits (611), Expect = 1.49e-79
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. NCBI nr
Match: XP_013457334.1 (40S ribosomal protein S15a-1 [Medicago truncatula] >XP_013469871.1 40S ribosomal protein S15a-1 [Medicago truncatula] >AFK33558.1 unknown [Medicago truncatula] >AFK40580.1 unknown [Medicago truncatula] >KEH31365.1 ribosomal protein S8 [Medicago truncatula] >KEH43909.1 ribosomal protein S8 [Medicago truncatula] >RHN62853.1 putative ribosomal protein S8 [Medicago truncatula])

HSP 1 Score: 239 bits (611), Expect = 1.49e-79
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy TrEMBL
Match: A0A6J1I5M1 (40S ribosomal protein S15a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469448 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.52e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy TrEMBL
Match: A0A6J1GAW0 (40S ribosomal protein S15a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111452473 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.52e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy TrEMBL
Match: I3SJY8 (Putative ribosomal protein S8 OS=Medicago truncatula OX=3880 GN=25493391 PE=2 SV=1)

HSP 1 Score: 239 bits (611), Expect = 7.22e-80
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy TrEMBL
Match: A0A6J1BY30 (40S ribosomal protein S15a-1 OS=Momordica charantia OX=3673 GN=LOC111006763 PE=3 SV=1)

HSP 1 Score: 239 bits (611), Expect = 7.22e-80
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. ExPASy TrEMBL
Match: A0A6J1FJB0 (40S ribosomal protein S15a-1 OS=Cucurbita moschata OX=3662 GN=LOC111444777 PE=3 SV=1)

HSP 1 Score: 239 bits (611), Expect = 7.22e-80
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. TAIR 10
Match: AT3G46040.1 (ribosomal protein S15A D )

HSP 1 Score: 242.3 bits (617), Expect = 2.0e-64
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. TAIR 10
Match: AT1G07770.1 (ribosomal protein S15A )

HSP 1 Score: 241.1 bits (614), Expect = 4.4e-64
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. TAIR 10
Match: AT1G07770.2 (ribosomal protein S15A )

HSP 1 Score: 241.1 bits (614), Expect = 4.4e-64
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. TAIR 10
Match: AT5G59850.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 241.1 bits (614), Expect = 4.4e-64
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           MYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG
Sbjct: 14  MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 73

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct: 74  VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130

[Close]

BLAST of Csor.00g015950 vs. TAIR 10
Match: AT2G39590.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-59
Identity = 107/117 (91.45%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCG 60
           M NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGKIVVELNGRLN CG
Sbjct: 20  MSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCG 79

Query: 61  VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 118
           VISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KNVGGKVLGFFY
Sbjct: 80  VISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136

The following BLAST results are available for this feature:

BLAST of Csor.00g015950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX88	2.8e-63	99.15	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=...	[more]
P42798	6.2e-63	98.29	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
Q00332	1.8e-62	97.44	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]
Q9AT34	6.9e-62	96.58	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
O80646	1.6e-58	91.45	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=...	[more]

BLAST of Csor.00g015950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583463.1	3.38e-80	100.00	40S ribosomal protein S15a-4, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022949003.1	5.20e-80	100.00	40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965015.1 40S ribos...	[more]
KAE8039001.1	1.49e-79	99.15	hypothetical protein FH972_011454 [Carpinus fangiana]	[more]
XP_022134546.1	1.49e-79	99.15	40S ribosomal protein S15a-1 [Momordica charantia] >XP_022143687.1 40S ribosomal...	[more]
XP_013457334.1	1.49e-79	99.15	40S ribosomal protein S15a-1 [Medicago truncatula] >XP_013469871.1 40S ribosomal...	[more]

BLAST of Csor.00g015950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5M1	2.52e-80	100.00	40S ribosomal protein S15a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469448 PE...	[more]
A0A6J1GAW0	2.52e-80	100.00	40S ribosomal protein S15a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111452473 ...	[more]
I3SJY8	7.22e-80	99.15	Putative ribosomal protein S8 OS=Medicago truncatula OX=3880 GN=25493391 PE=2 SV...	[more]
A0A6J1BY30	7.22e-80	99.15	40S ribosomal protein S15a-1 OS=Momordica charantia OX=3673 GN=LOC111006763 PE=3...	[more]
A0A6J1FJB0	7.22e-80	99.15	40S ribosomal protein S15a-1 OS=Cucurbita moschata OX=3662 GN=LOC111444777 PE=3 ...	[more]

BLAST of Csor.00g015950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46040.1	2.0e-64	99.15	ribosomal protein S15A D	[more]
AT1G07770.1	4.4e-64	98.29	ribosomal protein S15A	[more]
AT1G07770.2	4.4e-64	98.29	ribosomal protein S15A	[more]
AT5G59850.1	4.4e-64	98.29	Ribosomal protein S8 family protein	[more]
AT2G39590.1	1.1e-59	91.45	Ribosomal protein S8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 2..117 e-value: 4.3E-20 score: 71.9
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..117
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 87..104
None	No IPR available	GENE3D	3.30.1370.30		coord: 1..56 e-value: 4.3E-29 score: 102.2
None	No IPR available	GENE3D	3.30.1490.10		coord: 57..117 e-value: 9.1E-37 score: 126.5
None	No IPR available	PANTHER	PTHR11758:SF36	BNAA02G06730D PROTEIN	coord: 1..117
None	No IPR available	PANTHER	PTHR11758:SF39	OS02G0478600 PROTEIN	coord: 1..117
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g015950.m01	Csor.00g015950.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome