Csor.00g012910 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g012910
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 9562058 .. 9563352 (-)
RNA-Seq ExpressionCsor.00g012910
SyntenyCsor.00g012910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTATTTGGGCCTGTAGTTACTGGTCTTTCTTCAGTAGTCCGCGCCCGAACCCGAAGTAGCTCCCGCCTCTCCAAGTCGCTGATCGCACGACGCTCTCTCTGTCGCAGTTCTCATCTTCTTTCTCCGCAGTCGCCAACTCAACGATTTTCCTCAGAGTAATTCAATTCTTTCTCTGTTATCTTCGTTAATATGATTCCCAATTGATTCATCGATCTTGATTGTATAATTTTGTTGAAATCATCAAGATCTACACAGATTAACTTTGTAATTTCCCTTCAGAATTCAGAAACAAGCCCTGAGATTTGTCTGTCTGTTATTATTTCCTGCATTTTCTTAATTGGTATCCCAATCGGCAACACCATTGACTGTTTAGCAACGCCGATCGGTTATTTAGATTTGCATTTTAGTCGGCCAATTTTTTGTATTCCAATTTCGGAGACTCTCCTGAGTGATTTGATTCTGCGCACTATATGCTCTTTTCGTATACATTGGATAATGCGGTTAATGTGGGTCGTAATCGCCACAATGTGTTACTGGTTACTCGGATTTATGCTATTGATTTTCAACTTTCATGTTATGGTTCTCTTTAAGGAGTTTTATGTTCTGATGATTTTATCTGATGGAACGCGAAGCTCTGAATTAGTTTGATGACTCTGATGAAGTCTGGAGTAGATCCGTTCTGGTTATAACACCTTGAGTTACCCCCTTAACATGAATGCTGTCTTTTTAGTAAAATTATAATGTGAAGCGAGTTTAGTGCTGGATTGATTGGATTTTAGTGTAGTTTCTTTGAAATATGTCTTCATTTCTTAGATTTGGGATTCTTCTTTTCGCTGCTGAAAAAGGCGATTGCTTATTGCAATCTGCATCATGATGAAGTCTGAAGTTGTTGTTCTTTCTATGCAGCGTCATAGATCTTTCAGTGGAATGAAAAAACTAGAGATTGTTTCTGCAGATATGATATAGTTGATTGAGTTTCCTTGAATTAAAACGCATTCCATATGTTTGTGAATTTTAGTTTATGGGTTTGGTGTTGAGAGATCGATTGGAAATCTGTTAGTTTTGTTTACACGAGTTTTTCTTTTCTGTTGATAGTTTCATCTTCAAATGTCAATTTGAATACAAATTTGATCTGGGCTTTATCTCAAGATGATATTCTTTGTGTTTATATATATATTTGCATGAAGAATTGTTGTTAATGTGAAAACTAAATGTGTTGCAGATGTTTGACGATCGAGACCTGGGCTTCTTTGCAAATTTTCTGGGGATCTTTATATTTGTATTGGTAA

mRNA sequence

ATGAGACTATTTGGGCCTGTAGTTACTGGTCTTTCTTCAGTAGTCCGCGCCCGAACCCGAAGTAGCTCCCGCCTCTCCAAGTCGCTGATCGCACGACGCTCTCTCTGTCGCAGTTCTCATCTTCTTTCTCCGCAGTCGCCAACTCAACGATTTTCCTCAGAATGTTTGACGATCGAGACCTGGGCTTCTTTGCAAATTTTCTGGGGATCTTTATATTTGTATTGGTAA

Coding sequence (CDS)

ATGAGACTATTTGGGCCTGTAGTTACTGGTCTTTCTTCAGTAGTCCGCGCCCGAACCCGAAGTAGCTCCCGCCTCTCCAAGTCGCTGATCGCACGACGCTCTCTCTGTCGCAGTTCTCATCTTCTTTCTCCGCAGTCGCCAACTCAACGATTTTCCTCAGAATGTTTGACGATCGAGACCTGGGCTTCTTTGCAAATTTTCTGGGGATCTTTATATTTGTATTGGTAA

Protein sequence

MRLFGPVVTGLSSVVRARTRSSSRLSKSLIARRSLCRSSHLLSPQSPTQRFSSECLTIETWASLQIFWGSLYLYW
Homology
[Close]
BLAST of Csor.00g012910 vs. NCBI nr
Match: KAG6606261.1 (hypothetical protein SDJN03_03578, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036202.1 hypothetical protein SDJN02_03003, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (367), Expect = 7.81e-44
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MRLFGPVVTGLSSVVRARTRSSSRLSKSLIARRSLCRSSHLLSPQSPTQRFSSECLTIET 60
          MRLFGPVVTGLSSVVRARTRSSSRLSKSLIARRSLCRSSHLLSPQSPTQRFSSECLTIET
Sbjct: 1  MRLFGPVVTGLSSVVRARTRSSSRLSKSLIARRSLCRSSHLLSPQSPTQRFSSECLTIET 60

Query: 61 WASLQIFWGSLYLYW 75
          WASLQIFWGSLYLYW
Sbjct: 61 WASLQIFWGSLYLYW 75

The following BLAST results are available for this feature:
BLAST of Csor.00g012910 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g012910 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606261.17.81e-44100.00hypothetical protein SDJN03_03578, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g012910 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g012910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g012910.m01Csor.00g012910.m01mRNA