Csor.00g004550 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004550
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	CCR4-NOT transcription complex subunit like
Location	Csor_Chr08: 3294175 .. 3295687 (-)
RNA-Seq Expression	Csor.00g004550
Synteny	Csor.00g004550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCTATTCCTTCTTTCAGGTATCCGTAGTTTAATCACTCCTCTTCGATCCCTCGCATTCGACTTATTTGATCTCTGTAGATTTCAGGTCTGTTGTATATTGTTAATGAGACTAGTGATCGCTTTAGTAATGAAGTTCATCTGTTAGTTCTGTGAAGTAGTTCGACTTTGATCCTTTTGTTGATATTTGATAATGGAATCTGGCAGGTTGTTGCTAATTCCTAATTGTTTTTTGCTACTAACGCCAGGTGCTTATAAACTAGTATTATATTTTGTTTTTCGGAATTTTTATTAGTTTTCGTGTTCAGCAGTCCTCTACGATCCCTCGCATTAGACACAATTATTCCAGAAGATATCTGTACTGTTACCCTTGCAATGAGCATGTTAACAATGAAGTTCATCTGTTGCTTAGTTCTGTAAAGTGAATCCACCTTGATTCTTGTGATGGAAATGGAATTTGGCAGGTAGTAAAACACTGAATCTTAATTGGTTTTCGCTATGCTACTCCCGCAAGGAACTTATACTAGCATTAGGATCTTGCCTTTATTTTTCTGGTTTTCTTCCAATTCCAAGTTGAAACAGGATGAATCTTTGATTTGATACTTTCTGGCTTCCGGATGCGCCTGGGGAAAGTTTATTAGTTCTTTCTGAAAGCTCTCCTCTGATTGTGAAGTAGTTACATTTAAGACTGCCAGAAAATGATAATTCTGGAATGGCCTCTATAATTTCTTTGAAAAACATAGACCTTTTGGATGAATCACAGCTGTTGGAGGAACCACAGTAATAATAAATGGTTTAAATCTGTACAACAATTAATTGAATTCTATCATCTTCTCAAGTTGTCAGTTGGCTCAACAATTAATTTGGAGTTTCCTCTTTAAAATCTTCTGGAAGTATTGGTGCAAATACTGTTTCCTACCATTCATGGTTTGATCTTTATGGTATTTTGTCTGTTTAGACTTTCATTTACTTCAACTCTTTCCTCACAAAGACATGATATACTTATATAAAGCTAAATCAGTAGCTGAGATCCTCCTTGCATCTGCTAGTCAGATTTGCCAGAAATTAGAACACACCTAATCTGAGATGACTGATACTTGTAATCACAATATTGCTACTCAGCTGAGTGGTTGTGTGATTTCTTTTATGCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA

mRNA sequence

ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCTATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCTATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA

Protein sequence

MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVVKLISTK

Homology

[Close]

BLAST of Csor.00g004550 vs. NCBI nr
Match: KAG6593336.1 (hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (607), Expect = 7.71e-79
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. NCBI nr
Match: KAG7025683.1 (hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (601), Expect = 6.34e-78
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. NCBI nr
Match: XP_022959607.1 (uncharacterized protein LOC111460632 [Cucurbita moschata])

HSP 1 Score: 230 bits (587), Expect = 8.66e-76
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIAL V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. NCBI nr
Match: XP_023004845.1 (uncharacterized protein LOC111498025 [Cucurbita maxima])

HSP 1 Score: 230 bits (587), Expect = 8.66e-76
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKE+NDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. NCBI nr
Match: XP_023513743.1 (uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226 bits (577), Expect = 2.90e-74
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTK L+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKRLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEK DGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEKKDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 4.19e-76
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKE+NDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 4.19e-76
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIAL V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 KLISTK 126
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 1.52e-53
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPS-IVGVKFHRNGFPIPSFRYKNTKGLELRQRS 60
           MAS+F+APPS+++L+S RPSL H A LPS I G+++H N FPIPSFRY+NTKGLELRQRS
Sbjct: 1   MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60

Query: 61  FSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120
           FSITASNSSDGNS KE+N  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120

Query: 121 VKLISTK 126
           VKLISTK
Sbjct: 121 VKLISTK 126

[Close]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL
Match: A0A6J1CV15 (uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015032 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.76e-51
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MAS+FAAPPSQ++L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGLEL QRSF
Sbjct: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNS KE+      TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVV
Sbjct: 61  SITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120

Query: 121 KLISTK 126
           KLI  K
Sbjct: 121 KLIPAK 121

[Close]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.15e-50
Identity = 91/126 (72.22%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPS-IVGVKFHRNGFPIPSFRYKNTKGLELRQRS 60
           MAS+FAAPPS+++L+S RPSL H A LPS I G+++H N FPIPSFRY+NTKGLEL  RS
Sbjct: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRS 60

Query: 61  FSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120
           FSITASNSSDGNS +E+N  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120

Query: 121 VKLIST 125
           VKLIST
Sbjct: 121 VKLIST 125

The following BLAST results are available for this feature:

BLAST of Csor.00g004550 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g004550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593336.1	7.71e-79	100.00	hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025683.1	6.34e-78	99.21	hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022959607.1	8.66e-76	96.83	uncharacterized protein LOC111460632 [Cucurbita moschata]	[more]
XP_023004845.1	8.66e-76	96.83	uncharacterized protein LOC111498025 [Cucurbita maxima]	[more]
XP_023513743.1	2.90e-74	96.03	uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVQ7	4.19e-76	96.83	uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025...	[more]
A0A6J1H506	4.19e-76	96.83	uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1GPL5	1.52e-53	74.02	uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A6J1CV15	1.76e-51	70.63	uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1JUC2	1.15e-50	72.22	uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436...	[more]

BLAST of Csor.00g004550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004550.m01	Csor.00g004550.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane