CsaV3_7G021720 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021720
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 10398737 .. 10398997 (-)
RNA-Seq Expression	CsaV3_7G021720
Synteny	CsaV3_7G021720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

mRNA sequence

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

Coding sequence (CDS)

TGGCAATGCATTGACAATTACGAGTTAGTGAACAATTTTGGCCATGACAGTGGAATTGAACACCGAGGTGATGATGAGAATATTGGTCTTCATATGGACTTGGAAGTAGAACTCGGAGGTGATTATAAGAATCTTGATCTTCGTGGTGTTGATATGTCTGAGGCAGATGCCCAAGTACATCATGAAGAATTGCCACTTGAGGAAGGTGCAGTGGAAAGTGATGACGAAAAAGTTCTTCCATCAGTTGGCAAGAAAAAGTGA

Protein sequence

WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVHHEELPLEEGAVESDDEKVLPSVGKKK*

Homology

[Close]

BLAST of CsaV3_7G021720 vs. NCBI nr
Match: KAE8646045.1 (hypothetical protein Csa_016067, partial [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 7.4e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60
          WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH
Sbjct: 1  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60

Query: 61 HEELPLEEGAVESDDEKVLPSVGKKK 87
          HEELPLEEGAVESDDEKVLPSVGKKK
Sbjct: 61 HEELPLEEGAVESDDEKVLPSVGKKK 86

[Close]

BLAST of CsaV3_7G021720 vs. ExPASy TrEMBL
Match: A0A0A0K393 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.6e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 60
           WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH
Sbjct: 34  WQCIDNYELVNNFGHDSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVH 93

Query: 61  HEELPLEEGAVESDDEKVLPSVGKKK 87
           HEELPLEEGAVESDDEKVLPSVGKKK
Sbjct: 94  HEELPLEEGAVESDDEKVLPSVGKKK 119

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646045.1	7.4e-42	100.00	hypothetical protein Csa_016067, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G021720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K393	3.6e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206960 PE=4 SV=1	[more]

BLAST of CsaV3_7G021720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G021720.1	CsaV3_7G021720.1	mRNA