CsaV3_7G018740 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGAAACAACTTCACAAAGACATGGAAGGAGCACCAATTGATGCTACGGAGCACAGAAGCATCGTTTGTTGTCTTAGATACTTACTAAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAGATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCCAAAGAATTCAATATATTCGGTTACTCTGATAGTGATTTAGTCAGTGATCTCGATGCGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTGATGGAGTTTACAAAAGTAAAAGACGGTGACACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCAGAATGAAGCCAAGGTCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCTTGTATTTCATGGTCGCAGCAAGCACATAGATACACGTTTTCATATCATTCGAGAGTGTGTCGAGAATGGACAAATTATCACTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAATTTAGAATCATGTCAGGATTAGGGGGGTAGTGTGAGCTAATAATCTGCCATGATCTTCCTAAATAGGTGAAAGAATTACGTTATTTTTCTATTTATTGTTTTTGGTTATTTATTTTTTTAATTATCTCCAAAATTTTAGCTAGCACTAAGTTAGTGGGTACTAATTTTTGCTTTCTTTTTAGACTATAAATATTAGTTTAGTAAATTGAATAAAGGCAAGAAGTTCCGTTTATTTTCTCTCCCTCTTGGCAATATATCTTACAATTTAGTCCGTTTATCTTTGTTTTCTTCAAGAAAAGTGCGTGAGATTTTACAGATCCTTTGTTCTAAAACCAACAACCACTATCAACTCGCATGACATGAAGTAGCTAGGCGAGAAGAGTCTAAGTGTTGCTTAAGTCGTGTTTAGTGATTTTTAAGAATGTTGTATAAAGTACTGAATGTACTTTGTAATTTGAAATATCAATGAAGTTTTTCGCATTTAATCTAAGTCCACATTTTGTGTTAACACTTTTATGGTTGTCTGGCTTACCAGGCGCTTTACGCGTTGTTTCGCGAGTAATCTCTTGTAGGATGTCTAGACAGTTACGTCTCCACTTCATCATATATAAAGTATTTTTGGAGTGAAGTGTGACATTGACTCAAACTAAATTTTCTTTTGTTTTTTTTAGTTTGATAGTGAAAAGGGTGTGAGTAGTCAAACGTTTTGAAGAGAGTGGTTTTATAACTGAGAATGAAAAGTGAATAATAGTCGATGTGATTGTAAAAGTTTTTCAGATAGTAATAGTTTTTTAGTCCACGGTTTTTCTTAAGTTTGGGTGTTTTCTACGTAAACTGTGGGGTTTCCCACTTTGATTGGTTTCTTAAATTTCTCTATTACTTTTTTTTGTATATTCCTGCGGTAGAATTGGAAGGTTTTTGTCCAACTCACATATCTCACAAAAGGATGGTTGCGATGGTGTGGAAGGTTATCTCAAATGACTTGTCCACCTTGGGGAACATCATGGAAAGAGCAATCAATACTAATACCATTTGTTGACTTTGTTTTTCAGGAAAAGTACTGTGGAGATGATGAGTCATATCTTTTGGGGTTGCATGTTTGTGAAAGCATTTGA ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGAAACAACTTCACAAAGACATGGAAGGAGCACCAATTGATGCTACGGAGCACAGAAGCATCGTTTGTTGTCTTAGATACTTACTAAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAGATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCCAAAGAATTCAATATATTCGGTTACTCTGATAGTGATTTAGTCAGTGATCTCGATGCGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGACGGTGACACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCAGAATGAAGCCAAGGTCGGAAAAGTACTGTGGAGATGATGAGTCATATCTTTTGGGGTTGCATGTTTGTGAAAGCATTTGA ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGAAACAACTTCACAAAGACATGGAAGGAGCACCAATTGATGCTACGGAGCACAGAAGCATCGTTTGTTGTCTTAGATACTTACTAAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAGATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCCAAAGAATTCAATATATTCGGTTACTCTGATAGTGATTTAGTCAGTGATCTCGATGCGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGACGGTGACACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCAGAATGAAGCCAAGGTCGGAAAAGTACTGTGGAGATGATGAGTCATATCTTTTGGGGTTGCATGTTTGTGAAAGCATTTGA MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFYLNESLTVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDESYLLGLHVCESI* Homology
BLAST of CsaV3_7G018740 vs. NCBI nr
Match: KAE8645998.1 (hypothetical protein Csa_015477 [Cucumis sativus]) HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_031742485.1 (secreted RxLR effector protein 161-like [Cucumis sativus]) HSP 1 Score: 298.9 bits (764), Expect = 3.0e-77 Identity = 150/171 (87.72%), Postives = 153/171 (89.47%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_031741734.1 (uncharacterized protein LOC116403928 [Cucumis sativus]) HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76 Identity = 149/181 (82.32%), Postives = 157/181 (86.74%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_031745072.1 (secreted RxLR effector protein 161-like [Cucumis sativus]) HSP 1 Score: 282.7 bits (722), Expect = 2.2e-72 Identity = 146/182 (80.22%), Postives = 151/182 (82.97%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_038904466.1 (secreted RxLR effector protein 161-like [Benincasa hispida]) HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70 Identity = 138/181 (76.24%), Postives = 150/181 (82.87%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.3e-18 Identity = 61/160 (38.12%), Postives = 83/160 (51.88%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 5.6e-18 Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 2.4e-16 Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 85.9 bits (211), Expect = 5.2e-16 Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 9.0e-16 Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 2.7e-55 Identity = 112/181 (61.88%), Postives = 137/181 (75.69%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A6G1EJC3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014570 PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 6.0e-55 Identity = 112/181 (61.88%), Postives = 138/181 (76.24%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A6G1CG84 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_013366 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 9.5e-53 Identity = 110/181 (60.77%), Postives = 136/181 (75.14%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: Q10RM4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g05850 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52 Identity = 105/181 (58.01%), Postives = 134/181 (74.03%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 1.1e-51 Identity = 109/181 (60.22%), Postives = 132/181 (72.93%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16 Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16 Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 0
BLAST of CsaV3_7G018740 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 52.8 bits (125), Expect = 3.5e-07 Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|