CsaV3_7G018740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018740
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr7: 8698008 .. 8699868 (-)
RNA-Seq ExpressionCsaV3_7G018740
SyntenyCsaV3_7G018740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGAAACAACTTCACAAAGACATGGAAGGAGCACCAATTGATGCTACGGAGCACAGAAGCATCGTTTGTTGTCTTAGATACTTACTAAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAGATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCCAAAGAATTCAATATATTCGGTTACTCTGATAGTGATTTAGTCAGTGATCTCGATGCGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTGATGGAGTTTACAAAAGTAAAAGACGGTGACACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCAGAATGAAGCCAAGGTCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCTTGTATTTCATGGTCGCAGCAAGCACATAGATACACGTTTTCATATCATTCGAGAGTGTGTCGAGAATGGACAAATTATCACTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAATTTAGAATCATGTCAGGATTAGGGGGGTAGTGTGAGCTAATAATCTGCCATGATCTTCCTAAATAGGTGAAAGAATTACGTTATTTTTCTATTTATTGTTTTTGGTTATTTATTTTTTTAATTATCTCCAAAATTTTAGCTAGCACTAAGTTAGTGGGTACTAATTTTTGCTTTCTTTTTAGACTATAAATATTAGTTTAGTAAATTGAATAAAGGCAAGAAGTTCCGTTTATTTTCTCTCCCTCTTGGCAATATATCTTACAATTTAGTCCGTTTATCTTTGTTTTCTTCAAGAAAAGTGCGTGAGATTTTACAGATCCTTTGTTCTAAAACCAACAACCACTATCAACTCGCATGACATGAAGTAGCTAGGCGAGAAGAGTCTAAGTGTTGCTTAAGTCGTGTTTAGTGATTTTTAAGAATGTTGTATAAAGTACTGAATGTACTTTGTAATTTGAAATATCAATGAAGTTTTTCGCATTTAATCTAAGTCCACATTTTGTGTTAACACTTTTATGGTTGTCTGGCTTACCAGGCGCTTTACGCGTTGTTTCGCGAGTAATCTCTTGTAGGATGTCTAGACAGTTACGTCTCCACTTCATCATATATAAAGTATTTTTGGAGTGAAGTGTGACATTGACTCAAACTAAATTTTCTTTTGTTTTTTTTAGTTTGATAGTGAAAAGGGTGTGAGTAGTCAAACGTTTTGAAGAGAGTGGTTTTATAACTGAGAATGAAAAGTGAATAATAGTCGATGTGATTGTAAAAGTTTTTCAGATAGTAATAGTTTTTTAGTCCACGGTTTTTCTTAAGTTTGGGTGTTTTCTACGTAAACTGTGGGGTTTCCCACTTTGATTGGTTTCTTAAATTTCTCTATTACTTTTTTTTGTATATTCCTGCGGTAGAATTGGAAGGTTTTTGTCCAACTCACATATCTCACAAAAGGATGGTTGCGATGGTGTGGAAGGTTATCTCAAATGACTTGTCCACCTTGGGGAACATCATGGAAAGAGCAATCAATACTAATACCATTTGTTGACTTTGTTTTTCAGGAAAAGTACTGTGGAGATGATGAGTCATATCTTTTGGGGTTGCATGTTTGTGAAAGCATTTGA

mRNA sequence

ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGAAACAACTTCACAAAGACATGGAAGGAGCACCAATTGATGCTACGGAGCACAGAAGCATCGTTTGTTGTCTTAGATACTTACTAAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAGATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCCAAAGAATTCAATATATTCGGTTACTCTGATAGTGATTTAGTCAGTGATCTCGATGCGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGACGGTGACACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCAGAATGAAGCCAAGGTCGGAAAAGTACTGTGGAGATGATGAGTCATATCTTTTGGGGTTGCATGTTTGTGAAAGCATTTGA

Coding sequence (CDS)

ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGAAACAACTTCACAAAGACATGGAAGGAGCACCAATTGATGCTACGGAGCACAGAAGCATCGTTTGTTGTCTTAGATACTTACTAAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAGATACTTAGGTATTTGAGAGGGACAATTCACTTTGGGCTCACTTATACGAAAGGTCCCAAAGAATTCAATATATTCGGTTACTCTGATAGTGATTTAGTCAGTGATCTCGATGCGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGACGGTGACACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCAGAATGAAGCCAAGGTCGGAAAAGTACTGTGGAGATGATGAGTCATATCTTTTGGGGTTGCATGTTTGTGAAAGCATTTGA

Protein sequence

MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFYLNESLTVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDESYLLGLHVCESI*
Homology
BLAST of CsaV3_7G018740 vs. NCBI nr
Match: KAE8645998.1 (hypothetical protein Csa_015477 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME
Sbjct: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY
Sbjct: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120

Query: 121 LNESLTVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDESYLLGLHVC 180
           LNESLTVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDESYLLGLHVC
Sbjct: 121 LNESLTVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDESYLLGLHVC 180

Query: 181 ESI 184
           ESI
Sbjct: 181 ESI 183

BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_031742485.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 3.0e-77
Identity = 150/171 (87.72%), Postives = 153/171 (89.47%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M DCNATKYPMEPK QLHKD EGAPIDATE+RSIV CLRYLLNTRPDLSYAVGMASRYME
Sbjct: 44  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 103

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPTTMHYKVVKQILRYLRGTIHFGLTYTKGP+EFNIFGYSDSDL  DLD RKSTSGMTFY
Sbjct: 104 RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDGRKSTSGMTFY 163

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPR 163
           LNESL         TV LSSCEAEFIAATTAACQALWLRCLVSEIV M+PR
Sbjct: 164 LNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVGMEPR 214

BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_031741734.1 (uncharacterized protein LOC116403928 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 149/181 (82.32%), Postives = 157/181 (86.74%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M DCNATKYPMEPK QLHK+ +GAPIDATE+RSIV CLRYLLNTRPDLSYAVGMASRY+E
Sbjct: 144 MADCNATKYPMEPKAQLHKETKGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYIE 203

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPTTMHYKVVKQIL YLRGTIHFGLTYTKGP+EFNIFGYSDSDL  DLD RKSTSGMTFY
Sbjct: 204 RPTTMHYKVVKQILGYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDGRKSTSGMTFY 263

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
           LNESL         TV LSSCEAEFIAATTAACQALWLRCLVSEIVRM+PR      D++
Sbjct: 264 LNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVRMEPRPITLFVDNK 323

BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_031745072.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 2.2e-72
Identity = 146/182 (80.22%), Postives = 151/182 (82.97%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSI-VCCLRYLLNTRPDLSYAVGMASRYM 60
           M DCNATKYPMEPK QLHKD E APIDATE+RSI V  L YLLNTRPDLSY VGMASRYM
Sbjct: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60

Query: 61  ERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTF 120
           ERPTTMHYKVVKQILRYLRGTIHFGLTYTKGP+EFNIFGYSDSDL  DLD RKSTSGMTF
Sbjct: 61  ERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDGRKSTSGMTF 120

Query: 121 YLNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDD 173
           YLNESL         TV LSSCE EFIA TTAACQALWLRCLVSEIV M+PR      D+
Sbjct: 121 YLNESLVSWNSQKQKTVALSSCEVEFIATTTAACQALWLRCLVSEIVGMEPRPVTLFVDN 180

BLAST of CsaV3_7G018740 vs. NCBI nr
Match: XP_038904466.1 (secreted RxLR effector protein 161-like [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 138/181 (76.24%), Postives = 150/181 (82.87%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M DCNATKYPMEPK QLHKDMEGAPIDATE++SIV CLRYLLNTRPDLSY VGM +RYM+
Sbjct: 1   MDDCNATKYPMEPKAQLHKDMEGAPIDATEYKSIVGCLRYLLNTRPDLSYVVGMTNRYMK 60

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPT MH+KVVKQILRYLRGTIHFGLTY KGP+E +IFGY DSDLV DLD RKSTSGM FY
Sbjct: 61  RPTAMHHKVVKQILRYLRGTIHFGLTYVKGPREVDIFGYLDSDLVGDLDGRKSTSGMAFY 120

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
           LNESL         TV LSSCEAEF+AAT AACQALWLR LVSE+  M+PRS     D++
Sbjct: 121 LNESLVSWNSQKQKTVALSSCEAEFMAATIAACQALWLRSLVSELTGMEPRSVTLFVDNK 180

BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-18
Identity = 61/160 (38.12%), Postives = 83/160 (51.88%), Query Frame = 0

Query: 6    ATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYMERPTTM 65
            AT     PK  LH   +  P D TE+R IV  L+YL  TRPDLSYAV   S+YM  PT  
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDD 1264

Query: 66   HYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFYL---- 125
            H+  +K++LRYL GT   G+   KG    ++  YSD+D   D D   ST+G   YL    
Sbjct: 1265 HWNALKRVLRYLAGTPDHGIFLKKG-NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHP 1324

Query: 126  -----NESLTVTLSSCEAEFIAATTAACQALWLRCLVSEI 157
                  +   V  SS EAE+ +    + +  W+  L++E+
Sbjct: 1325 ISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTEL 1361

BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.6e-18
Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = 0

Query: 10   PMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYMERPTTMHYKV 69
            PM P  +L         D TE+R IV  L+YL  TRPD+SYAV   S++M  PT  H + 
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQA 1283

Query: 70   VKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFYL-------- 129
            +K+ILRYL GT + G+   KG    ++  YSD+D   D D   ST+G   YL        
Sbjct: 1284 LKRILRYLAGTPNHGIFLKKG-NTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWS 1343

Query: 130  -NESLTVTLSSCEAEFIAATTAACQALWLRCLVSEI-VRMKPRSEKYC 168
              +   V  SS EAE+ +    + +  W+  L++E+ +R+      YC
Sbjct: 1344 SKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1390

BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-16
Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 0

Query: 31   HRSIVCCLRY-LLNTRPDLSYAVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTK 90
            + S V  L Y ++ TRPD+++AVG+ SR++E P   H++ VK ILRYLRGT    L +  
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-- 1170

Query: 91   GPKEFNIFGYSDSDLVSDLDARKSTSGMTFYLNESL---------TVTLSSCEAEFIAAT 150
            G  +  + GY+D+D+  D+D RKS++G  F  +             V LS+ EAE+IAAT
Sbjct: 1171 GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAAT 1230

Query: 151  TAACQALWLRCLVSEIVRMKPRSEKYC 168
                + +WL+  + E+   +     YC
Sbjct: 1231 ETGKEMIWLKRFLQELGLHQKEYVVYC 1255

BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-16
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 0

Query: 1    MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRY-LLNTRPDLSYAVGMASRYM 60
            M +CNA   P+ P K  ++ +       T  RS++ CL Y +L TRPDL+ AV + SRY 
Sbjct: 1152 MENCNAVSTPL-PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYS 1211

Query: 61   ERPTTMHYKVVKQILRYLRGTIHFGLTYTKG-PKEFNIFGYSDSDLVSDLDARKSTSGMT 120
             +  +  ++ +K++LRYL+GTI   L + K    E  I GY DSD       RKST+G  
Sbjct: 1212 SKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYL 1271

Query: 121  FYL----------NESLTVTLSSCEAEFIAATTAACQALWLRCLVSEI 157
            F +              +V  SS EAE++A   A  +ALWL+ L++ I
Sbjct: 1272 FKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSI 1318

BLAST of CsaV3_7G018740 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.0e-16
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 33  SIVCCLRYLL-NTRPDLSYAVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGP 92
           S V  + YL+  TRPDL+ AVG+ S++   P   H++ +K++LRYL+ T  +GL +T+  
Sbjct: 8   SAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAG 67

Query: 93  KEFNIFGYSDSDLVSDLDARKSTSGMTFYLN---------ESLTVTLSSCEAEFIAATTA 150
               + GYSD+D   D+++R+STSG  F LN         +  TV LSS E E++A + A
Sbjct: 68  TA-KLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEA 127

BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.7e-55
Identity = 112/181 (61.88%), Postives = 137/181 (75.69%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M DCN TK PMEP+ QL+KD EG P+DATE+R  + CLRYL++TRPDL YAVG+ASR+ME
Sbjct: 202 MFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRFIGCLRYLVHTRPDLLYAVGVASRFME 261

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPT MH+K VKQILRYL+GTI+FGL YT+G  E  I G++DSDL  D+D RKS  GM FY
Sbjct: 262 RPTVMHHKAVKQILRYLKGTINFGLVYTRGKGEEVIVGFTDSDLAGDVDDRKSIGGMAFY 321

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
           +NESL         TV LSSCEAEF+AAT AACQALWLR L+ E++  +P+  K   D++
Sbjct: 322 VNESLVSWNSQKQKTVALSSCEAEFMAATAAACQALWLRGLLDELIGREPQVVKLYVDNK 381

BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A6G1EJC3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014570 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 6.0e-55
Identity = 112/181 (61.88%), Postives = 138/181 (76.24%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M++CN TK+PME + QLHKD EG P DA E+R I+ CLRYLL+TRPD+S+AVG+ASR++E
Sbjct: 65  MSECNPTKFPMELRTQLHKDGEGHPADAMEYRRIIGCLRYLLHTRPDMSFAVGVASRFIE 124

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPT MH+K VKQILRYL+G IH+GL Y+KG     I GY+DSDL  DLD RKST GM FY
Sbjct: 125 RPTVMHHKAVKQILRYLKGIIHYGLVYSKGGGAEVITGYTDSDLAGDLDDRKSTGGMAFY 184

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
           +NESL         TV LSSCEAEF+AAT AACQALWLR L++E+ + +PR  K   D++
Sbjct: 185 VNESLVAWSSQKQRTVALSSCEAEFMAATAAACQALWLRSLLAELNKEQPRPVKVFVDNK 244

BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A6G1CG84 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_013366 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.5e-53
Identity = 110/181 (60.77%), Postives = 136/181 (75.14%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M+ CN TK+PMEP+ QLHKD EG P+DATE+  I+  LRYLL+TRPD+S+AVG+ASR+ME
Sbjct: 44  MSKCNPTKFPMEPRTQLHKDGEGHPVDATEYHRIIGRLRYLLHTRPDMSFAVGVASRFME 103

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           R T MH+K VKQILRYL+GTIH+GL Y+KG     I  Y++SDL  DLD RKST GM FY
Sbjct: 104 RLTVMHHKAVKQILRYLKGTIHYGLVYSKGGGTEVITRYTNSDLAGDLDDRKSTGGMLFY 163

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
           +NESL         TV LSSCE EF+AAT AACQALWLR L++E+ + +PR  K   D++
Sbjct: 164 VNESLVTWSSQKQRTVALSSCEVEFMAATAAACQALWLRSLLTELNKEQPRPVKVFIDNK 223

BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: Q10RM4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 105/181 (58.01%), Postives = 134/181 (74.03%), Query Frame = 0

Query: 1    MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
            M +CN+   P++P+ QL KD EG P+DATE+R I+  LRYLL+TRPDLSYAVG+ASR+ME
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFME 1214

Query: 61   RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
            RPT MH+K VKQILRY++GT+ +GL Y  G     I GY+DSDL  DLD R+ST GM FY
Sbjct: 1215 RPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFY 1274

Query: 121  LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
            +N+SL         TV LSSCEAEF+AATTAACQALWLR L++E+  ++ ++ K   D+ 
Sbjct: 1275 INQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNR 1334

BLAST of CsaV3_7G018740 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.1e-51
Identity = 109/181 (60.22%), Postives = 132/181 (72.93%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M D N TKYPME K Q+HKD +G P+DATE+R +V CLRYLL+TRPDLS+AVG+ASR+ME
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHME 140

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
           RPT MH K+VKQ+LRYL+GTI  GL Y +G  +  + G++DSDL  DLD RKST GM FY
Sbjct: 141 RPTVMHQKLVKQMLRYLKGTIDLGLVYVQGTGKEVLTGFTDSDLGGDLDDRKSTGGMAFY 200

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEIVRMKPRSEKYCGDDE 173
           LN +L         TV LSSCEAEFIAA TAACQALWL+ ++ E+   K  S K   D+ 
Sbjct: 201 LNNNLVSWTSQKQKTVALSSCEAEFIAAATAACQALWLKSMLEELTGEKQGSVKLYVDNN 260

BLAST of CsaV3_7G018740 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16
Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 0

Query: 4   CNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYMERPT 63
           C  +  PM+P         G  +DA  +R ++  L YL  TR D+S+AV   S++ E P 
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410

Query: 64  TMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFYLNE 123
             H + V +IL Y++GT+  GL Y+    E  +  +SD+   S  D R+ST+G   +L  
Sbjct: 411 LAHQQAVMKILHYIKGTVGQGLFYS-SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGT 470

Query: 124 SL---------TVTLSSCEAEFIAATTAACQALWLRCLVSEI 157
           SL          V+ SS EAE+ A + A  + +WL     E+
Sbjct: 471 SLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFREL 511

BLAST of CsaV3_7G018740 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 0

Query: 1   MTDCNATKYPMEPKKQLHKDMEGAPIDATEHRSIVCCLRYLLNTRPDLSYAVGMASRYME 60
           M DC     P+  K          P D ++ RSIV  L+YL  TRPD+SYAV +  + M 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  RPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGYSDSDLVSDLDARKSTSGMTFY 120
            PT   + ++K++LRY++GTI  GL   K  K  N+  + DSD       R+ST+G   +
Sbjct: 131 EPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK-LNVQAFCDSDWAGCTSTRRSTTGFCTF 190

Query: 121 LNESL---------TVTLSSCEAEFIAATTAACQALW 149
           L  ++         TV+ SS E E+ A    A +  W
Sbjct: 191 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

BLAST of CsaV3_7G018740 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-07
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 40  YLLNTRPDLSYAVGMASRYMERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPKEFNIFGY 99
           YL  TRPDL++AV   S++     T   + V ++L Y++GT+  GL Y+    +  +  +
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYS-ATSDLQLKAF 61

Query: 100 SDSDLVSDLDARKSTSG 117
           +DSD  S  D R+S +G
Sbjct: 62  ADSDWASCPDTRRSVTG 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8645998.12.3e-101100.00hypothetical protein Csa_015477 [Cucumis sativus][more]
XP_031742485.13.0e-7787.72secreted RxLR effector protein 161-like [Cucumis sativus][more]
XP_031741734.12.5e-7682.32uncharacterized protein LOC116403928 [Cucumis sativus][more]
XP_031745072.12.2e-7280.22secreted RxLR effector protein 161-like [Cucumis sativus][more]
XP_038904466.14.7e-7076.24secreted RxLR effector protein 161-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9ZT944.3e-1838.13Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW25.6e-1835.71Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P109782.4e-1636.73Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041465.2e-1636.31Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV729.0e-1639.37Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A5K0VEQ62.7e-5561.88Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym... [more]
A0A6G1EJC36.0e-5561.88Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyerian... [more]
A0A6G1CG849.5e-5360.77Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyerian... [more]
Q10RM42.1e-5258.01Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
A0A0A9FJ501.1e-5160.22Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax O... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.4e-1632.72cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.4e-1634.39DNA/RNA polymerases superfamily protein [more]
ATMG00240.13.5e-0735.06Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 26..118
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 26..118
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 98..156
e-value: 3.98478E-24
score: 90.2201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G018740.1CsaV3_7G018740.1mRNA