CsaV3_7G003560 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G003560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 2654436 .. 2655839 (-)
RNA-Seq Expression	CsaV3_7G003560
Synteny	CsaV3_7G003560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTGAGCGTTTCATCATCTCCCTTTTACCTTATTGACTCCATGCTTGGCTTGGCATATTTTTGACGAAGTATTCTTAAATTGTTTAACATAGGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGTAAATGACCAACCTTCGTTTTTCTGATTGTAAAGTTTGTTTTTAAAATTGTAGTAGCACTATGAGGGTGAGGATCAGAAATTAGAATCACAGATCTCTCGGTTAGGCTAACACGTCAGTTGTGCTAATTTGATTGTTTAAGTTAAATATTTGATTTGGTCTTTTAAACCTTTTGAAAATTTAAAAACTTGGATGTATTATATTTTAAATGAAGACATTCCAGAAATAAGTTTGCTAAAATTTATTAACTTAAAGTAATTGTGTAGTTGAATTTTTGTTTTAGTAACATACTTAGACATGCCTCTTGGTAGAAATGTGTTTTTCCCCTTTCTTGCTTAGGCGGGTGGTGTTCTATACGTCAGGTAGAATTTATATGGCAAGCTTTAGTAATTCAATGATACACCAAATTTGTTTTGACAAATGTTAACCAATTTCTTAATGGAAAGGACCTAATGCAGAATTCTGTATACATTGGAGGTTATACTGAGATCAAATTGAGAATTATCTAAAAGATTAAAATACCTGGTTTATATCTAGCCGACGGATATAAAAAAAATCTATTTAAGAGTTCAGATATCAACATCTTCTTAAGACCCTTTGGGGTAAGGGCTAATATAGGGCCAGTATTGTTTCTTATATTGACAATATTTTTAACTATTAATTCAATTGTTTTTTTTATAAAGAAATGTGAAATTCACAATGGAGAAATTAGGAGAAGTGAATTGCATTTTTCAATTATAAATTTTGGTTAGAATTTTAATCACACTTAGAAATAGATTTTATTTTTGTTTACTATCAAAGTGAAAATGTGAACTTTTAACTTTTGGTAGACTTAACAAGTTTGCCTTGAAAGATGAACTAGATTAAAAAGAGATGGTTGGTAGATGCGTTGAACTGAACTTTGAAATAAAAGAGTAATATCCATCTTAGGTAGAAACTATACCTAATCAGGTAACATTGTGTAACATCTAAATTAGTAAATAATATCATTAGCCTGACATCAAGGATGCTTTGTTAAGACAATATTGTCTTAGCCATTGGGAGAAAAAGACAGTCTAACAAATAGTCTTTTAATGGTGGAATTTTACTATGGCTTCTATCTAATAATGGCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

mRNA sequence

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

Coding sequence (CDS)

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

Protein sequence

MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGSNILTIIX

Homology

[Close]

BLAST of CsaV3_7G003560 vs. NCBI nr
Match: KGN43555.2 (hypothetical protein Csa_020416, partial [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60

Query: 61 NILTII 67
          NILTII
Sbjct: 61 NILTII 66

[Close]

BLAST of CsaV3_7G003560 vs. ExPASy TrEMBL
Match: A0A0A0LF24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727890 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 19 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 78

Query: 61 NILTII 67
          NILTII
Sbjct: 79 NILTII 84

The following BLAST results are available for this feature:

BLAST of CsaV3_7G003560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43555.2	1.7e-30	100.00	hypothetical protein Csa_020416, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G003560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G003560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF24	8.3e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727890 PE=4 SV=1	[more]

BLAST of CsaV3_7G003560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G003560.1	CsaV3_7G003560.1	mRNA