CsaV3_7G002380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G002380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 1871473 .. 1872569 (-)
RNA-Seq Expression	CsaV3_7G002380
Synteny	CsaV3_7G002380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTATTTCCATTTAAGATTGGATTTCCCACTCTGCCGTACACATCAAATTCAATAATAAGAATTTTATTTTTCTTTTATTTATTTTTTAATAAAACCATCCTTATTTTTTCCTTTTACTAAACCCTATTTCTCGCTCAGTCATTCTCTCCGTCTATTACTGAACCCTCCCCCGCCTGCCGCACTCCCTCCGCTCTTCCTCCTACCGGACGGCGCACTAACAGCTGCCGCAGCCTCAGCCTCAGCCTTCCGGCGAATTCGCTGTTGCCCCCCTCCATCTTACACTCTCGCCTCTTCCAGCAATCTGAGTTGCTTATATCTGTTTTTCATTCTTCTTAGAAGCACACTGGTTCAGCCCCTTGTCATCGCCGCCGTTGCTCATTTTTCAGGTCTCCAAGGTTTTTTTTTTTCGCTTTATTTTGTTTTGTTGGGCTATGTTGGTTTATTCTCTTCACCGACGGAGAAGAAAAATCGATAGTGTTTTTTTTGGGGTTGTTGATTGCTTCTTCAACCAATGTTCAAGTAGTCTGAATGAAATTATAAAGTTAAGAATTTTTATTAGAGGGAAAAAAAGATTGAATCAAGAGGAATAAGGGAAAAAACTTATCATTCCTATCGGTGTTAGTAAATGAAATGATAAAATGTTTAAGAAGATGAACAAAGAAAAAGAGAAAATTCACTTAGTTTGTTTGGCTATAAAAAGACTTGTTGGAACAGAAAGCCTGTGTTTAAATATATTAAAGTTATTGTTATCAATTAAAAACAAAATCAACATTGGACAAATAAACTAGAAAGATAACATTGAGTTTGAGTATGATCGAACGACATCGAATCTTCTTGAATATTGAAGAAACTATGAATGCCTACGAACTGGCATATGGTGGTTTTTGTTAGACAGGCGTAAATTAAATTTATACATATATAAGAAATCTTATGAGGTGTTCATATATATTATGGGGTAGAATTGTAAACAGGTGTGTGTATATTAGTTTAAACTCATGTCATTTTTCAAACAATTGGTTTCATTTTTTTGGGACATCCGAAAACACTGATTTATAATCCTTCCAAATTCAGGGGTTTCAAACAGGGGTTAA

mRNA sequence

ATGTTTTTATTTCCATTTAAGATTGGATTTCCCACTCTGCCTCATTCTCTCCGTCTATTACTGAACCCTCCCCCGCCTGCCGCACTCCCTCCGCTCTTCCTCCTACCGGACGGCGCACTAACAGCTGCCGCAGCCTCAGCCTCAGCCTTCCGGCGAATTCGCTGTTGCCCCCCTCCATCTTACACTCTCGCCTCTTCCAGCAATCTGAGTTGCTTATATCTGTTTTTCATTCTTCTTAGAAGCACACTGGTTCAGCCCCTTGTCATCGCCGCCGTTGCTCATTTTTCAGGGGTTTCAAACAGGGGTTAA

Coding sequence (CDS)

ATGTTTTTATTTCCATTTAAGATTGGATTTCCCACTCTGCCTCATTCTCTCCGTCTATTACTGAACCCTCCCCCGCCTGCCGCACTCCCTCCGCTCTTCCTCCTACCGGACGGCGCACTAACAGCTGCCGCAGCCTCAGCCTCAGCCTTCCGGCGAATTCGCTGTTGCCCCCCTCCATCTTACACTCTCGCCTCTTCCAGCAATCTGAGTTGCTTATATCTGTTTTTCATTCTTCTTAGAAGCACACTGGTTCAGCCCCTTGTCATCGCCGCCGTTGCTCATTTTTCAGGGGTTTCAAACAGGGGTTAA

Protein sequence

MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPSYTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG*

Homology

[Close]

BLAST of CsaV3_7G002380 vs. NCBI nr
Match: KGN43395.1 (hypothetical protein Csa_020426 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPS 60
           MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPS
Sbjct: 1   MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPS 60

Query: 61  YTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG 103
           YTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG
Sbjct: 61  YTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG 102

[Close]

BLAST of CsaV3_7G002380 vs. ExPASy TrEMBL
Match: A0A0A0K125 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031560 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPS 60
           MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPS
Sbjct: 1   MFLFPFKIGFPTLPHSLRLLLNPPPPAALPPLFLLPDGALTAAAASASAFRRIRCCPPPS 60

Query: 61  YTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG 103
           YTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG
Sbjct: 61  YTLASSSNLSCLYLFFILLRSTLVQPLVIAAVAHFSGVSNRG 102

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43395.1	4.0e-47	100.00	hypothetical protein Csa_020426 [Cucumis sativus]	[more]

BLAST of CsaV3_7G002380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K125	2.0e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031560 PE=4 SV=1	[more]

BLAST of CsaV3_7G002380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002380.1	CsaV3_7G002380.1	mRNA