Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTATTTCTCGGATTCTTGCTCTCCCTTCTCCTTCAATATGTGTGCAATGTCAATGGTGAGACAACAACAACGGTGAACGTCTGCAACATTGGTAATGGTCTTCTTCGATGACCTCCATTTCAAACTACTACATAAAAAAGAACTTTTTCGTCTTTTCGGAGGGAGATGGCTCTCTCTCTTATTTCCTCTCTGGCTACTCCCACTCAAACTTCTCCTGAATTTTCACCCGCCTACTCACTTTATCCAAGAAGAACAGCTTCATCTCCGAACACATGTCGTTCAACAAGAGAAAGATTTCAGTAATAGCATATGCATTTACTCCACCAAATCTTTCTTTACCCCAGGAAGATCTCCATATCATCTCAAACATATACTATTTCAACCTCTTCTATCTTCTTCCACTACTACCTCTTCATTTTCTTTCCTTGTTCTCCAAACAAGCAACATGGCTCATCTCCGACAACTACCCTGTACTTGCTCCATTGAAAAAAAGGATTTTGTGATTTCTATTGACAACCGATCCAGAGAGCTCAGGTTTCTCATAACAGAAATGGGCCCCTACAAATCCTACTCCATCTCTGTCACCCCAGAATCTTTTGACTGGCTTAGTTCTACTTTCAGTACTCTAATGGATACACCTAAAACGACAAGATTCTTTCTTGAAAAAAGATTTGAGGATAACTGCCTGTGGGTCCAAAAAACACACAACCGTAAAGGTTACTTGGCAGAAATCTTAAGAGTGGATGATCGGGGTAGGAAATCTTGCATCCTTATCCCTAAAGGATCTGAAAAACAAGGATGGGCTCAGTTTACAGACATGCTGACATTAAGGAAGGAAGCTGCTCAAAAAAGGAAGATGACAACAACTACTGAAGACAGAGGCAAAAAAGCTTCATCTTATAGCTCCTTATCTGAGTTAGACAGCCCACGCAAATCTTACACAAAAGTGCTGACAAACAGTAGCTCATCAGACTCTGGCTCTCCTAAAATTCTTCCTTCTAGTAACAAAAAAGAAGAGACTCCCACTGGGGCTTTTGACTCTCTCGACTGGACTAAAACAGTGGTGATCACTAGAAGATATTTTCATGACGACTGGAAGAAAATCATGGCGAAACTACAAGAACAGTTGGATCTCAACATCACTTACAAGCCCTTTCATGCAGAAAAGGTTGCAGTTACGATTGAAGATAAGAACTTAGTGAACCTCCTTTGTAAAAATAGAGGGTGGACTACGGTTGGAAAGTATTATGTCAAATTTGAGGCTTCGAACATTGCCAAACATGCTTCCCCAAAGTGTCTGCCAAGCTATGGTGGTTAGGTCAAATTCAAAGGTATTCCCCTTCATGCATGGAATTACTCGTGTTTTTATCAAATTGGAGAAGCATGTGGTGGGTTTGTTGAAGTCGTCAAAATTACCAAAGACAGACTCGATCTCTTTGAGGCAGATATCAAAATCAAATATAACCACTCGGGCTTCATTCCTACCTTTGTTAGGATTGCCGATGAGGATGGAAATCAATTTACAATTCAGACTGTTGTACAAGCTGAAGGGAAATGGCTCAAAGAAAGAAATCCCAGAATTCATGGTACATTCACAAATGAAGCAGCAAAAAATTTCAATGAATTCAAACAAGATTGTGAACAGTACCAGTTTATTGATAATATTGCAGTGCCGGCAAACTGGGCCTCACCGAAAAACATACAAGACGAAAGAAAAAAAAACGCATCAGAATAGTGACCGGCAAAAAACCATAAAAAAACAGGATGCAATGATGAAAATTTTAAATTATGACGGTGGAAGTGACAGTAGTGGGAGATTACAGGGAAGCTCTACTGACAAGATAAAGACACCAACTGACAGAAAAAAAAAGAGAGAAAATTATACAAAGGAGAAAGCTCCAACCAACGGTCTACTCAAAATTCAAAGAGAAAGGTTTCCTTCACTTCTCCAAAGAATAAAATATATTTCTTTGACCCTAGAAGTGTGCCCCTTAGGCCCATCAGAATAAGAAGCCCAGAAGAGAACAACCAGAAAGGAAGCCCAAAAAGCCCAGTCAATCTAAAAAAGAAAGGCAAACAGATCTACCGAGTAAAGACTCCAAAAGCAGCAATGGGCTTAGAAAAAACAAATACATAAGAAGAAAGGGGAAAACAGAGTCAAACAAAAAAAGAAATTTTCGATATGGAAGGGATAAACCTCACGGTAGACTTGGGCCATCTTTCCCCCAACACTGATGTTGCTATCTCAAGCCCAGAAAACATCACTCCAAATACTCATCTTTCTATAGCTCAATCGGAGATTGGCAATGACAACATTGGTCCATGTTGATCAGTGACAAGGAAGATGCCGAATTAAATGACACAGAAAAGATCAATGATGATGAAGCCTTTAAAAAGAAGCTTTTGGATTGGTTGAAAAACAACAACCTGAAGCTCACTACAAGCTCCTCTGCTGGTATTGTTAATGAAGATAGTGAGACTATTGGTGATGAGAATGTAATGATTCTGTATGAAAAAGGGGAAAAATAGTCTCCCATGAAAGTCTTATGTTGGAACATTAGAGGGTTGAGCTCTCCCTCAAAAAGAGCACAAATAAAAAATTTGCTTTCCCGTTACTATCAAAATTTGTGATTCTTGTGGAAACAAAACTGCAACATATCAACAAAAAAATTATTAAATCTCTTTGGAGCCCTATAAGTATTAAATGGCAATTCTCCCCTGCTGAAAATAGTTCGGGAGGTATTGTAATCATGTGGGATGACACAAGATATAAAGTGATTGACTTTCTTATGAAAAAATTCACTCTCTCTATTAACATTTCATATCCCAAAGATACAATAAACTCTCACTGGTGGCTAACAGCAGTCTATGGGCCATCGAAACGGGAAAATAGAGGAGATTTCTGGATGGAGCTTGAAGAGATTAAATCAACTTGCCTTCCAAGATGGCTTATGGGTGGGGACTTCAATATTGTCAGATGGCAATCGGAAACTACAGCAAAAAATATTGCAGTTCCCTGTATGAATTCTTCAATTCTTTCATTTCGGGATGCGATTTCTATTATCCCCCAATTTCAAATGCCAAATACACTTGGTCAAACCTCAAGGCTTGACAGATTCCTTTATACTCCAAATTGGGAATCTATTTTTGAACCCCACTTTTCAAGACTGCTCCTCAGAGAAACATCAGACCATTTTTCCATTACACTTGAGTCAAACAGCCTTAAGTGGGGCCCATCACCGTTCAGATTCACCAATACCTTTCTCAAAGAAGTTTCATTTAAACAAAACTTTGAGCATTGGTGGACAAACACTGCACAAGCCGGTCACCCTGGATATTCTTTTATGAGGAGACTCAAACAACTTTCTCAAACAATCAAGAGTTGGAGTAAAAGCATAAAAGACTCAATTGTTGAAGAAAGACAGGCTTTACTGAAAGAACTCGAGCACATTGACAATCTGAAAGCTAATAACTATCACATATATGCACATATCCAGCAAAACATCCATCAAAACTGA
mRNA sequence
ATGACTTTATTTCTCGGATTCTTGCTCTCCCTTCTCCTTCAATATGTGTGCAATGTCAATGGTGAGACAACAACAACGGTGAACGTCTGCAACATTGATACAATAAACTCTCACTGGTGGCTAACAGCAGTCTATGGGCCATCGAAACGGGAAAATAGAGGAGATTTCTGGATGGAGCTTGAAGAGATTAAATCAACTTGCCTTCCAAGATGGCTTATGGGTGGGGACTTCAATATTGTCAGATGGCAATCGGAAACTACAGCAAAAAATATTGCAGTTCCCTGTATGAATTCTTCAATTCTTTCATTTCGGGATGCGATTTCTATTATCCCCCAATTTCAAATGCCAAATACACTTGGTCAAACCTCAAGGCTTGACAGATTCCTTTATACTCCAAATTGGGAATCTATTTTTGAACCCCACTTTTCAAGACTGCTCCTCAGAGAAACATCAGACCATTTTTCCATTACACTTGAGTCAAACAGCCTTAAGTGGGGCCCATCACCGTTCAGATTCACCAATACCTTTCTCAAAGAAGTTTCATTTAAACAAAACTTTGAGCATTGGTGGACAAACACTGCACAAGCCGGTCACCCTGGATATTCTTTTATGAGGAGACTCAAACAACTTTCTCAAACAATCAAGAGTTGGAGTAAAAGCATAAAAGACTCAATTGTTGAAGAAAGACAGGCTTTACTGAAAGAACTCGAGCACATTGACAATCTGAAAGCTAATAACTATCACATATATGCACATATCCAGCAAAACATCCATCAAAACTGA
Coding sequence (CDS)
ATGACTTTATTTCTCGGATTCTTGCTCTCCCTTCTCCTTCAATATGTGTGCAATGTCAATGGTGAGACAACAACAACGGTGAACGTCTGCAACATTGATACAATAAACTCTCACTGGTGGCTAACAGCAGTCTATGGGCCATCGAAACGGGAAAATAGAGGAGATTTCTGGATGGAGCTTGAAGAGATTAAATCAACTTGCCTTCCAAGATGGCTTATGGGTGGGGACTTCAATATTGTCAGATGGCAATCGGAAACTACAGCAAAAAATATTGCAGTTCCCTGTATGAATTCTTCAATTCTTTCATTTCGGGATGCGATTTCTATTATCCCCCAATTTCAAATGCCAAATACACTTGGTCAAACCTCAAGGCTTGACAGATTCCTTTATACTCCAAATTGGGAATCTATTTTTGAACCCCACTTTTCAAGACTGCTCCTCAGAGAAACATCAGACCATTTTTCCATTACACTTGAGTCAAACAGCCTTAAGTGGGGCCCATCACCGTTCAGATTCACCAATACCTTTCTCAAAGAAGTTTCATTTAAACAAAACTTTGAGCATTGGTGGACAAACACTGCACAAGCCGGTCACCCTGGATATTCTTTTATGAGGAGACTCAAACAACTTTCTCAAACAATCAAGAGTTGGAGTAAAAGCATAAAAGACTCAATTGTTGAAGAAAGACAGGCTTTACTGAAAGAACTCGAGCACATTGACAATCTGAAAGCTAATAACTATCACATATATGCACATATCCAGCAAAACATCCATCAAAACTGA
Protein sequence
MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLGQTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNIHQN*
Homology
BLAST of CsaV3_7G000110 vs. NCBI nr
Match:
KAE8645642.1 (hypothetical protein Csa_020231 [Cucumis sativus])
HSP 1 Score: 541.6 bits (1394), Expect = 3.8e-150
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMEL 60
MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMEL
Sbjct: 1 MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMEL 60
Query: 61 EEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLG 120
EEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLG
Sbjct: 61 EEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLG 120
Query: 121 QTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEV 180
QTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEV
Sbjct: 121 QTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEV 180
Query: 181 SFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHID 240
SFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHID
Sbjct: 181 SFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHID 240
Query: 241 NLKANNYHIYAHIQQNIHQN 261
NLKANNYHIYAHIQQNIHQN
Sbjct: 241 NLKANNYHIYAHIQQNIHQN 260
BLAST of CsaV3_7G000110 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 231.5 bits (589), Expect = 8.4e-57
Identity = 109/214 (50.93%), Postives = 146/214 (68.22%), Query Frame = 0
Query: 39 WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
WWL+A+YGP+KR+NR FW ELE +KS CLP W++GGDFN++RW+ ETT KN A+ M
Sbjct: 31 WWLSAIYGPAKRKNRPLFWEELEHLKSICLPTWILGGDFNVIRWKEETTTKNPALLSMR- 90
Query: 99 SILSFRDAISII------PQFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRET 158
SF ++I ++ N Q SRLDRFL+T WE+IF H S++L R T
Sbjct: 91 RFNSFISNCNLIDPPLSNAKYTWSNLRAQATLSRLDRFLFTSQWENIFPGHTSKVLTRTT 150
Query: 159 SDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQL 218
SDHF I LES+++ WGPSPFRFTN +LK+ +K+N E WW NT+Q G+ GYSFMRRLKQL
Sbjct: 151 SDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMRRLKQL 210
Query: 219 SQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
+ IK+W + K ++A +KE++ ID L+A
Sbjct: 211 ALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEA 243
BLAST of CsaV3_7G000110 vs. NCBI nr
Match:
TYK29577.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 224.6 bits (571), Expect = 1.0e-54
Identity = 107/226 (47.35%), Postives = 146/226 (64.60%), Query Frame = 0
Query: 39 WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
WWL+A+YGP+KR+NR FW ELE +KS C P W++GGDFN++RW+ ET+ KN A M
Sbjct: 235 WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 294
Query: 99 SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
+ I P +F N Q SRLDRFL++ +WE+IF H S++L R TS
Sbjct: 295 FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTRTTS 354
Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
DHF I LES+++ WGPSPFRFTN +LK+ +K+N E WW NT+Q G+ GYSFM RLKQL+
Sbjct: 355 DHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLKQLA 414
Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
IK+W + K ++A +KE++ ID L+A H ++ I
Sbjct: 415 LKIKAWGREKKGKNEASKKAWIKEIDLIDKLEAEGSATEIHREKRI 460
BLAST of CsaV3_7G000110 vs. NCBI nr
Match:
TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 223.4 bits (568), Expect = 2.3e-54
Identity = 107/226 (47.35%), Postives = 144/226 (63.72%), Query Frame = 0
Query: 39 WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
WWL+A+YGP+KR+NR FW ELE +KS C P W++GGDFN++RW+ ET+ KN A M
Sbjct: 31 WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 90
Query: 99 SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
+ I P +F N Q SRLDRFL++ WE+IF H S++L R TS
Sbjct: 91 FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTQWENIFPGHTSKVLTRTTS 150
Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
DHF I LES+S+ WGPSPFRFTN +LK+ +K+N E WW NT+Q G GYSFM RLKQL+
Sbjct: 151 DHFPIVLESSSISWGPSPFRFTNAYLKDPDYKRNIEFWWGNTSQPGFAGYSFMHRLKQLA 210
Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
IK+W + K ++A +KE++ I+ L+A H ++ I
Sbjct: 211 MKIKAWGREKKGKDEASKKAWIKEIDLINKLEAEGTSTEIHREKRI 256
BLAST of CsaV3_7G000110 vs. NCBI nr
Match:
TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.5 bits (532), Expect = 3.4e-50
Identity = 106/234 (45.30%), Postives = 145/234 (61.97%), Query Frame = 0
Query: 19 VNGETTTTVNVCNID-TINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDF 78
+ G + ++N+ + D NS WWL+A+YGPS NR FW EL ++K+ C P WL+ GDF
Sbjct: 13 IEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKNKCSPTWLLAGDF 72
Query: 79 NIVRWQSETTAKNIAVPCMNSSILSFRDAISIIP-----QFQMPNTLGQ--TSRLDRFLY 138
N+VR+ SET+A+N + M D+ I P +F N SR+DRFLY
Sbjct: 73 NVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRVHPVLSRIDRFLY 132
Query: 139 TPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWW 198
T NWE++F H+S+ L R TSDHF I LES+ + WGPSPF+ N LKE FK N +WW
Sbjct: 133 TTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLKEPWFKNNITNWW 192
Query: 199 TNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
N Q GHPG+SFMR+LKQLS I++ + K E++ A +KE++ ID L+A
Sbjct: 193 KNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDSIDRLEA 246
BLAST of CsaV3_7G000110 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 4.1e-57
Identity = 109/214 (50.93%), Postives = 146/214 (68.22%), Query Frame = 0
Query: 39 WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
WWL+A+YGP+KR+NR FW ELE +KS CLP W++GGDFN++RW+ ETT KN A+ M
Sbjct: 31 WWLSAIYGPAKRKNRPLFWEELEHLKSICLPTWILGGDFNVIRWKEETTTKNPALLSMR- 90
Query: 99 SILSFRDAISII------PQFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRET 158
SF ++I ++ N Q SRLDRFL+T WE+IF H S++L R T
Sbjct: 91 RFNSFISNCNLIDPPLSNAKYTWSNLRAQATLSRLDRFLFTSQWENIFPGHTSKVLTRTT 150
Query: 159 SDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQL 218
SDHF I LES+++ WGPSPFRFTN +LK+ +K+N E WW NT+Q G+ GYSFMRRLKQL
Sbjct: 151 SDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMRRLKQL 210
Query: 219 SQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
+ IK+W + K ++A +KE++ ID L+A
Sbjct: 211 ALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEA 243
BLAST of CsaV3_7G000110 vs. ExPASy TrEMBL
Match:
A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)
HSP 1 Score: 224.6 bits (571), Expect = 5.0e-55
Identity = 107/226 (47.35%), Postives = 146/226 (64.60%), Query Frame = 0
Query: 39 WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
WWL+A+YGP+KR+NR FW ELE +KS C P W++GGDFN++RW+ ET+ KN A M
Sbjct: 235 WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 294
Query: 99 SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
+ I P +F N Q SRLDRFL++ +WE+IF H S++L R TS
Sbjct: 295 FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTRTTS 354
Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
DHF I LES+++ WGPSPFRFTN +LK+ +K+N E WW NT+Q G+ GYSFM RLKQL+
Sbjct: 355 DHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLKQLA 414
Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
IK+W + K ++A +KE++ ID L+A H ++ I
Sbjct: 415 LKIKAWGREKKGKNEASKKAWIKEIDLIDKLEAEGSATEIHREKRI 460
BLAST of CsaV3_7G000110 vs. ExPASy TrEMBL
Match:
A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 107/226 (47.35%), Postives = 144/226 (63.72%), Query Frame = 0
Query: 39 WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
WWL+A+YGP+KR+NR FW ELE +KS C P W++GGDFN++RW+ ET+ KN A M
Sbjct: 31 WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 90
Query: 99 SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
+ I P +F N Q SRLDRFL++ WE+IF H S++L R TS
Sbjct: 91 FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTQWENIFPGHTSKVLTRTTS 150
Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
DHF I LES+S+ WGPSPFRFTN +LK+ +K+N E WW NT+Q G GYSFM RLKQL+
Sbjct: 151 DHFPIVLESSSISWGPSPFRFTNAYLKDPDYKRNIEFWWGNTSQPGFAGYSFMHRLKQLA 210
Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
IK+W + K ++A +KE++ I+ L+A H ++ I
Sbjct: 211 MKIKAWGREKKGKDEASKKAWIKEIDLINKLEAEGTSTEIHREKRI 256
BLAST of CsaV3_7G000110 vs. ExPASy TrEMBL
Match:
A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 106/234 (45.30%), Postives = 145/234 (61.97%), Query Frame = 0
Query: 19 VNGETTTTVNVCNID-TINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDF 78
+ G + ++N+ + D NS WWL+A+YGPS NR FW EL ++K+ C P WL+ GDF
Sbjct: 13 IEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKNKCSPTWLLAGDF 72
Query: 79 NIVRWQSETTAKNIAVPCMNSSILSFRDAISIIP-----QFQMPNTLGQ--TSRLDRFLY 138
N+VR+ SET+A+N + M D+ I P +F N SR+DRFLY
Sbjct: 73 NVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRVHPVLSRIDRFLY 132
Query: 139 TPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWW 198
T NWE++F H+S+ L R TSDHF I LES+ + WGPSPF+ N LKE FK N +WW
Sbjct: 133 TTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLKEPWFKNNITNWW 192
Query: 199 TNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
N Q GHPG+SFMR+LKQLS I++ + K E++ A +KE++ ID L+A
Sbjct: 193 KNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDSIDRLEA 246
BLAST of CsaV3_7G000110 vs. ExPASy TrEMBL
Match:
A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)
HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 107/234 (45.73%), Postives = 145/234 (61.97%), Query Frame = 0
Query: 19 VNGETTTTVNVCNID-TINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDF 78
+ G + ++N+ D +S WWL+A+YGPS NR FW EL ++K+ C P WL+ GDF
Sbjct: 13 IEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKNKCSPTWLLAGDF 72
Query: 79 NIVRWQSETTAKNIAVPCMNSSILSFRDAISIIP-----QFQMPNTLGQ--TSRLDRFLY 138
N VR+ SET+ +N + M D+ I P +F N Q SR+DRFLY
Sbjct: 73 NAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRVQPVLSRIDRFLY 132
Query: 139 TPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWW 198
T NWE++F H+S+ L R TSDHF I LES+ + WGPSPF+F N LKE FK+N WW
Sbjct: 133 TANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLKEPWFKKNVTIWW 192
Query: 199 TNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
N Q GHPG+SFM++LKQLS I+ K K EE++A +KE+++ID L+A
Sbjct: 193 KNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDNIDRLEA 246
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8645642.1 | 3.8e-150 | 100.00 | hypothetical protein Csa_020231 [Cucumis sativus] | [more] |
| KAA0039950.1 | 8.4e-57 | 50.93 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
| TYK29577.1 | 1.0e-54 | 47.35 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYJ99326.1 | 2.3e-54 | 47.35 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYK06777.1 | 3.4e-50 | 45.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T9I7 | 4.1e-57 | 50.93 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3E0F6 | 5.0e-55 | 47.35 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3BJP3 | 1.1e-54 | 47.35 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3C4J1 | 1.6e-50 | 45.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3DLM2 | 4.8e-50 | 45.73 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
