CsaV3_6G039160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G039160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Sacchrp_dh_NADP domain-containing protein
Location	chr6: 22497020 .. 22497767 (+)
RNA-Seq Expression	CsaV3_6G039160
Synteny	CsaV3_6G039160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAATATTTTAGAGATAGAAGCAAAGTTCAAAATTTGGTTCAACTGTTCGATCCTTTTGTTCGAGCATTTGATGGTCTTGCTGGAGAACGTGTATCCATGAGGGTGAGACAAAATTTCTTAAGAAGTTTGAATGTGTATAAAAAGTTTCCTAATCCTTGCTTTCTTATGTAGGTTGATTTGGAATGTTCAAATGGGCGAAACACTGTGGGTATTTTCAGTCATCGGAGGCTCTCCCAGTAAGAGTTTTCCCCCTCCTCCCCTCTTAAGAGCCGTTCTCAATCAACTTCCAGTTGTATTTATGCAATATGAACTCCATATGTTCTTCAAATATTGAGTTATATTTGAACTCTTTCAGATCAGTGGGATATTCAACAGCTGCATTTGCACTTGCTGTTCTTGAGGGAAGCACACAACCTGGAGTTTGGTTCCCTGAAGAGGTATTGTATCTGAAATATTTACCCAGAAAGTTTGTCATTGGCTTTAAATATAATCGCATCTATCTATAGCCCGAAGGAATAGCAATTGAGGCGAGGGAAGTTCTTCTAAGACGCGCTGCCCAAGGGACGATCAATTTTGTAATGAACAAGTACGATGATCTAACCGATTCCAATGAGTATACAGGTATATATTGTTTAGTACTTCATCTTTTCGGATTATCATAATCACCTATTGTAATCTCAACAGGCCTCCATGGATGGTTGAAACAGAGCCTAAAGAACTTGGGTTAGGAATATATGTCTGA

mRNA sequence

ATGCAGGAATATTTTAGAGATAGAAGCAAAGTTCAAAATTTGGTTCAACTGTTCGATCCTTTTGTTCGAGCATTTGATGGTCTTGCTGGAGAACGTGTATCCATGAGGGTTGATTTGGAATGTTCAAATGGGCGAAACACTGTGGGTATTTTCAGTCATCGGAGGCTCTCCCAATCAGTGGGATATTCAACAGCTGCATTTGCACTTGCTGTTCTTGAGGGAAGCACACAACCTGGAGTTTGGTTCCCTGAAGAGCCCGAAGGAATAGCAATTGAGGCGAGGGAAGTTCTTCTAAGACGCGCTGCCCAAGGGACGATCAATTTTGTAATGAACAAGCCTCCATGGATGGTTGAAACAGAGCCTAAAGAACTTGGGTTAGGAATATATGTCTGA

Coding sequence (CDS)

ATGCAGGAATATTTTAGAGATAGAAGCAAAGTTCAAAATTTGGTTCAACTGTTCGATCCTTTTGTTCGAGCATTTGATGGTCTTGCTGGAGAACGTGTATCCATGAGGGTTGATTTGGAATGTTCAAATGGGCGAAACACTGTGGGTATTTTCAGTCATCGGAGGCTCTCCCAATCAGTGGGATATTCAACAGCTGCATTTGCACTTGCTGTTCTTGAGGGAAGCACACAACCTGGAGTTTGGTTCCCTGAAGAGCCCGAAGGAATAGCAATTGAGGCGAGGGAAGTTCTTCTAAGACGCGCTGCCCAAGGGACGATCAATTTTGTAATGAACAAGCCTCCATGGATGGTTGAAACAGAGCCTAAAGAACTTGGGTTAGGAATATATGTCTGA

Protein sequence

MQEYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGYSTAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPKELGLGIYV*

Homology

[Close]

BLAST of CsaV3_6G039160 vs. NCBI nr
Match: KAE8647375.1 (hypothetical protein Csa_002882 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MQEYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSV 60
           MQEYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSV
Sbjct: 1   MQEYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSV 60

Query: 61  GYSTAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETE 120
           GYSTAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETE
Sbjct: 61  GYSTAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETE 120

Query: 121 PKELGLGIYV 131
           PKELGLGIYV
Sbjct: 121 PKELGLGIYV 130

[Close]

BLAST of CsaV3_6G039160 vs. NCBI nr
Match: XP_011657630.1 (uncharacterized protein LOC101209190 isoform X2 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY
Sbjct: 300 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 359

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK
Sbjct: 360 STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 419

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 420 ELGLGIYV 427

[Close]

BLAST of CsaV3_6G039160 vs. NCBI nr
Match: XP_008449691.1 (PREDICTED: uncharacterized protein LOC103491489 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY
Sbjct: 296 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 355

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFALAVLEG+TQPGVWFPEEPEGIAIEAREVLL RAAQGTINFVMNKPPWMVETEPK
Sbjct: 356 STAAFALAVLEGNTQPGVWFPEEPEGIAIEAREVLLSRAAQGTINFVMNKPPWMVETEPK 415

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 416 ELGLGIYV 423

[Close]

BLAST of CsaV3_6G039160 vs. NCBI nr
Match: KAA0061783.1 (Saccharopine dehydrogenase isoform 2 [Cucumis melo var. makuwa] >TYJ96124.1 Saccharopine dehydrogenase isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY
Sbjct: 287 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 346

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFALAVLEG+TQPGVWFPEEPEGIAIEAREVLL RAAQGTINFVMNKPPWMVETEPK
Sbjct: 347 STAAFALAVLEGNTQPGVWFPEEPEGIAIEAREVLLSRAAQGTINFVMNKPPWMVETEPK 406

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 407 ELGLGIYV 414

[Close]

BLAST of CsaV3_6G039160 vs. NCBI nr
Match: KAG7010280.1 (hypothetical protein SDJN02_27073, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.2e-65
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNG+NTVGIFSHRRLSQSVGY
Sbjct: 291 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGQNTVGIFSHRRLSQSVGY 350

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFA+AVLEGSTQPGVWFPEEPEGIA+EAREVLLRRAA GTINFVMNKPPWMVETEPK
Sbjct: 351 STAAFAIAVLEGSTQPGVWFPEEPEGIAVEAREVLLRRAAHGTINFVMNKPPWMVETEPK 410

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 411 ELGLGIYV 418

[Close]

BLAST of CsaV3_6G039160 vs. ExPASy TrEMBL
Match: A0A0A0KEK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434350 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.2e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY
Sbjct: 175 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 234

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK
Sbjct: 235 STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 294

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 295 ELGLGIYV 302

[Close]

BLAST of CsaV3_6G039160 vs. ExPASy TrEMBL
Match: A0A5A7V0V0 (Saccharopine dehydrogenase isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00900 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.1e-66
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY
Sbjct: 287 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 346

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFALAVLEG+TQPGVWFPEEPEGIAIEAREVLL RAAQGTINFVMNKPPWMVETEPK
Sbjct: 347 STAAFALAVLEGNTQPGVWFPEEPEGIAIEAREVLLSRAAQGTINFVMNKPPWMVETEPK 406

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 407 ELGLGIYV 414

[Close]

BLAST of CsaV3_6G039160 vs. ExPASy TrEMBL
Match: A0A1S3BMK8 (uncharacterized protein LOC103491489 OS=Cucumis melo OX=3656 GN=LOC103491489 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.1e-66
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY
Sbjct: 296 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 355

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFALAVLEG+TQPGVWFPEEPEGIAIEAREVLL RAAQGTINFVMNKPPWMVETEPK
Sbjct: 356 STAAFALAVLEGNTQPGVWFPEEPEGIAIEAREVLLSRAAQGTINFVMNKPPWMVETEPK 415

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 416 ELGLGIYV 423

[Close]

BLAST of CsaV3_6G039160 vs. ExPASy TrEMBL
Match: A0A6J1FYX2 (uncharacterized protein LOC111449104 OS=Cucurbita moschata OX=3662 GN=LOC111449104 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNG+NTVGIFSHRRLSQSVGY
Sbjct: 296 EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGQNTVGIFSHRRLSQSVGY 355

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFA+AVLEGSTQPGVWFPEEPEGIA+EAREVLLRRAA GTINFVMNKPPWMVETEPK
Sbjct: 356 STAAFAIAVLEGSTQPGVWFPEEPEGIAVEAREVLLRRAAHGTINFVMNKPPWMVETEPK 415

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 416 ELGLGIYV 423

[Close]

BLAST of CsaV3_6G039160 vs. ExPASy TrEMBL
Match: A0A6J1J8E6 (uncharacterized protein LOC111484409 OS=Cucurbita maxima OX=3661 GN=LOC111484409 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           EYFRDRSKVQ+LVQLFDPFVRAFDGL+GERVSMRVDLECS G+NTVGIFSHRRLSQSVGY
Sbjct: 296 EYFRDRSKVQSLVQLFDPFVRAFDGLSGERVSMRVDLECSKGQNTVGIFSHRRLSQSVGY 355

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAFA+AVLEGSTQPGVWFPEEPEGIA+EAREVLLRRAAQGTINFVMNKPPWMVETEPK
Sbjct: 356 STAAFAIAVLEGSTQPGVWFPEEPEGIAVEAREVLLRRAAQGTINFVMNKPPWMVETEPK 415

Query: 123 ELGLGIYV 131
           ELGLGIYV
Sbjct: 416 ELGLGIYV 423

[Close]

BLAST of CsaV3_6G039160 vs. TAIR 10
Match: AT1G50450.1 (Saccharopine dehydrogenase )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 100/128 (78.12%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 3   EYFRDRSKVQNLVQLFDPFVRAFDGLAGERVSMRVDLECSNGRNTVGIFSHRRLSQSVGY 62
           E  RDR+KVQ +V+LFDP VRA DG AGERVSMRVDLECS+GR TVG+FSH++LS SVG 
Sbjct: 301 EVLRDRTKVQQMVELFDPVVRAMDGFAGERVSMRVDLECSDGRTTVGLFSHKKLSVSVGV 360

Query: 63  STAAFALAVLEGSTQPGVWFPEEPEGIAIEAREVLLRRAAQGTINFVMNKPPWMVETEPK 122
           STAAF  A+LEGSTQPGVWFPEEP+GIA+EAREVLL+RA+QGT NF++NKPPWMVETEPK
Sbjct: 361 STAAFVAAMLEGSTQPGVWFPEEPQGIAVEAREVLLKRASQGTFNFILNKPPWMVETEPK 420

Query: 123 ELGLGIYV 131
           E+ LGIYV
Sbjct: 421 EVVLGIYV 428

The following BLAST results are available for this feature:

BLAST of CsaV3_6G039160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647375.1	1.2e-67	100.00	hypothetical protein Csa_002882 [Cucumis sativus]	[more]
XP_011657630.1	1.7e-66	100.00	uncharacterized protein LOC101209190 isoform X2 [Cucumis sativus]	[more]
XP_008449691.1	1.9e-65	98.44	PREDICTED: uncharacterized protein LOC103491489 [Cucumis melo]	[more]
KAA0061783.1	1.9e-65	98.44	Saccharopine dehydrogenase isoform 2 [Cucumis melo var. makuwa] >TYJ96124.1 Sacc...	[more]
KAG7010280.1	4.2e-65	96.88	hypothetical protein SDJN02_27073, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_6G039160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G039160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK7	8.2e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434350 PE=4 SV=1	[more]
A0A5A7V0V0	9.1e-66	98.44	Saccharopine dehydrogenase isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BMK8	9.1e-66	98.44	uncharacterized protein LOC103491489 OS=Cucumis melo OX=3656 GN=LOC103491489 PE=...	[more]
A0A6J1FYX2	2.0e-65	96.88	uncharacterized protein LOC111449104 OS=Cucurbita moschata OX=3662 GN=LOC1114491...	[more]
A0A6J1J8E6	2.2e-64	95.31	uncharacterized protein LOC111484409 OS=Cucurbita maxima OX=3661 GN=LOC111484409...	[more]

BLAST of CsaV3_6G039160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50450.1	1.7e-56	78.13	Saccharopine dehydrogenase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43796	CARBOXYNORSPERMIDINE SYNTHASE	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G039160.1	CsaV3_6G039160.1	mRNA