CsaV3_6G036310 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G036310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	AP2-like ethylene-responsive transcription factor
Location	chr6: 20178210 .. 20180742 (+)
RNA-Seq Expression	CsaV3_6G036310
Synteny	CsaV3_6G036310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGTCAAGGGGGTCAAGAGACGGCGGAGAAATGCTTCTTCTTCCTCCCCCACAGTCGGTGGTGGTGGAGATGGTCAACCACACAAGTTAATGCCAAATCAATCCACTGCCACAAAGAGAAGCTCAAAGTTTCGTGGAGTTAGCAGGTACTCATTCACAGTACTTTCACAATTTTTAATTTTCTTCTTCTTTAATTATTCTCTGACTTCTCTTTTTACTTCTCTTTTTATGTATTTAATTTAAGTTCTTTTACAGTCTTTTTTTTTTATTTAGTGGAAATTTTAAAAGGTTTGAGTTCAGTATAGCATACGAGAATGAGACCATAAAATTATGATTTATCCTTGAGACTAAGCAAATAGAAAATAAACAGACACCGATGGACAGGACGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACCCAAAGAAAGAAAGGAAAACAAGGTAAATAAATGGAGAAAAGAAAAAAAAGGAACTACTTAATTTTCATATATTTGGTGTTTGTGGAAGAATGGCAAATTAATTAAAGCTCATAATTTTGACTTGTCTGTGTTATATTGTGATATGTGATGATGAATGATGATGAACTCATTGGTGACATTGTAATAAATGGAGCAGTTTATTTAGGTATGTTTTGTTAATATAACAAATTAAATTGTAAATACATATCATAAAGTATAAAATCAAAGTATATGATGATGTGATAAATGTGTGTTTAAATGAAAACAGGAGCTTATGATGAAGAAGAATCAGCCGCTAGAGCATATGACTTGGCTGCACTTAAGTACTGGGGAACATCCACTTTCACTAATTTTTCGGTACCCTTTTCATTATTATTCTATTTGCTCCACTAATTATCATTAGTTGTTAATTAACTTCTTCACACAATCAATTAAGAGTACTTAAAAAGTCCACATTTTCATAGTCTTAAAAACTAGCTGATCATAACAATAACAATTAATTCTAAAAAACTATATAAGAAATGAGAAATTTCAACAAATTCAACGAGCCAACCTTGGTATTTGAACGCAAGCATTACAAATCCAACAAACTTAATTTATCACCTCAAACACGACTACAACATTTATAGTAATTCTAATTCTAGGCAACAACGAACCTCATTGTAAATCAATTTTTTAGTTACATCGATTACATTCAAATGACTCTATAAAAGATCACTCAAACTGCGGCCACATCTCATCACACAAGTATTATTAATTATGTGTATCAATTGCAAAACCTTAGGGCAACAAACGGGCTTAGTTGTCCCTAAATTTCACCAATATGTATGCTTACTTGCTAAAACGTGACTACTATTTGAATTATTTCTTTTACCTAAGTTAATAAAATATGTCATCAACTTTAATTTATCGTAGAGTGTGTGTGAAAACTACTTTTAAACTTTTACAAAGATTTTGAAAATATTTTTATCGTTAGTTTTGAATAACGAAACTTTGAAAGTTCAAAAAAGTATTCTTAAACTAAAAAAAAGAATAACCCTAAATTAAAAAAGAAGTTAAAGAAATATTTCAATCCTTAATTCCGTGATAAATATGATTGAAGTTCCTTTAAGCAAAAAAAAAAAAGTCAATTTTAAAATAATTTATATAAACACTTTCATTTTCTCCTATTTTTCAAATTCTATCAAATATATCCAAACCTAAACCTAAATTAATGCAAAATTCGAGAATCAGAGTCTCCTACGTGGAACTTTGTTCAAACATTTAAGTTCTAAAGTTTTTCGATGCTTTCATTATTATTCTTTTTAGTTTATATACCTGATTTGGAATGTACATTTTTTTTTCTTTTCAAGATAAACACACATGCCAAATGGTTTAAAATAGAGTAAAAGGATATGGAGAAGTAGAAGAGAATAAAGAGAAAATGGAGAAGTAAGAATGATATTAACCATTTATGTTCGGATAATCATAAGTGTAATTTTTAAAGAAAAATTTTGACACACGACTAAAATGGCATCATCCAAAACTAACCATAACCATATTTTTCAATATTCAATTGAAATTAACGTAAATATTTAATTAGATATGAATAATTTAATTATATAAGATAATATAAATTAAAATATTCAATTGTGTGTGTGTGTGAAAATTTTAAAACAGTTAAGGAAATTGAAAATTGAAAAAGGAAATTAAAACCAATCTATATTTAGTTTAAGCCATGATTTAATTATCTGGTTTGTTCATATAGTAATTGCTGATTATTTTGTGCAGATATCTGATTATGAGAATGAGATTAAGATAATGAAAACTGTGACAAAAGAGGAATACTTGGCCTCTTTGAGAAGGTAATTAATTTTCCATACTTTTTATCTTACATTTTGTTTCATTACCATATGATTTCTAATTTTAATTTTTGCAAATTAAACAATATTAATCATTCTACAACGTTGCAAAAGTTTAGCTTTATGTTTTGGCTTCATTCATTCTTACTAGGAGAAGTAGCGGTTTCTCGAGAGGTGTATCAAGATATCGAGGAGTCGCAAGGTAATGCCACTTAG

mRNA sequence

ATGGCCGCCGTCAAGGGGGTCAAGAGACGGCGGAGAAATGCTTCTTCTTCCTCCCCCACAGTCGGTGGTGGTGGAGATGGTCAACCACACAAGTTAATGCCAAATCAATCCACTGCCACAAAGAGAAGCTCAAAGTTTCGTGGAGTTAGCAGACACCGATGGACAGGACGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACCCAAAGAAAGAAAGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCCGCTAGAGCATATGACTTGGCTGCACTTAAGTACTGGGGAACATCCACTTTCACTAATTTTTCGATATCTGATTATGAGAATGAGATTAAGATAATGAAAACTGTGACAAAAGAGGAATACTTGGCCTCTTTGAGAAGCTTTATGTTTTGGCTTCATTCATTCTTACTAGGAGAAGTAGCGGTTTCTCGAGAGGTGTATCAAGATATCGAGGAGTCGCAAGGTAATGCCACTTAG

Coding sequence (CDS)

ATGGCCGCCGTCAAGGGGGTCAAGAGACGGCGGAGAAATGCTTCTTCTTCCTCCCCCACAGTCGGTGGTGGTGGAGATGGTCAACCACACAAGTTAATGCCAAATCAATCCACTGCCACAAAGAGAAGCTCAAAGTTTCGTGGAGTTAGCAGACACCGATGGACAGGACGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACCCAAAGAAAGAAAGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCCGCTAGAGCATATGACTTGGCTGCACTTAAGTACTGGGGAACATCCACTTTCACTAATTTTTCGATATCTGATTATGAGAATGAGATTAAGATAATGAAAACTGTGACAAAAGAGGAATACTTGGCCTCTTTGAGAAGCTTTATGTTTTGGCTTCATTCATTCTTACTAGGAGAAGTAGCGGTTTCTCGAGAGGTGTATCAAGATATCGAGGAGTCGCAAGGTAATGCCACTTAG

Protein sequence

MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLRSFMFWLHSFLLGEVAVSREVYQDIEESQGNAT*

Homology

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BLAST of CsaV3_6G036310 vs. NCBI nr
Match: KAE8647297.1 (hypothetical protein Csa_004348 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60

Query: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK 120
           HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK
Sbjct: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK 120

Query: 121 TVTKEEYLASLRSFMFWLHSFLLGEVAVSREVYQDIEESQGNAT 165
           TVTKEEYLASLRSFMFWLHSFLLGEVAVSREVYQDIEESQGNAT
Sbjct: 121 TVTKEEYLASLRSFMFWLHSFLLGEVAVSREVYQDIEESQGNAT 164

[Close]

BLAST of CsaV3_6G036310 vs. NCBI nr
Match: XP_031742891.1 (AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 132/135 (97.78%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 18  MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 77

Query: 61  HLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIK 120
           HLWDKGSWNPTQRKKGKQ   GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIK
Sbjct: 78  HLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIK 137

Query: 121 IMKTVTKEEYLASLR 133
           IMKTVTKEEYLASLR
Sbjct: 138 IMKTVTKEEYLASLR 152

[Close]

BLAST of CsaV3_6G036310 vs. NCBI nr
Match: KAA0036452.1 (AP2-like ethylene-responsive transcription factor [Cucumis melo var. makuwa] >TYK00034.1 AP2-like ethylene-responsive transcription factor [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.9e-63
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSS TVG GGDGQPHK MPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 1   MAAVKGVKRRRRNASSSS-TVGDGGDGQPHKSMPNQSTATKRSSKFRGVSRHRWTGRFEA 60

Query: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK 120
           HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNF ISDYENEIKIMK
Sbjct: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYENEIKIMK 120

Query: 121 TVTKEEYLASLR 133
           TVTKEEYLASLR
Sbjct: 121 TVTKEEYLASLR 131

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BLAST of CsaV3_6G036310 vs. NCBI nr
Match: XP_008456799.1 (PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSS TVG GGDGQPHK MPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 18  MAAVKGVKRRRRNASSSS-TVGDGGDGQPHKSMPNQSTATKRSSKFRGVSRHRWTGRFEA 77

Query: 61  HLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIK 120
           HLWDKGSWNPTQRKKGKQ   GAYDEEESAARAYDLAALKYWGTSTFTNF ISDYENEIK
Sbjct: 78  HLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYENEIK 137

Query: 121 IMKTVTKEEYLASLR 133
           IMKTVTKEEYLASLR
Sbjct: 138 IMKTVTKEEYLASLR 151

[Close]

BLAST of CsaV3_6G036310 vs. NCBI nr
Match: XP_038885870.1 (AP2-like ethylene-responsive transcription factor At1g16060 [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 114/133 (85.71%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 3   AVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHL 62
           AVKG+KRRRR ASSSS    GGGDGQPHK M + STATKRSSKFRGVSRHRWTGRFEAHL
Sbjct: 19  AVKGIKRRRRCASSSSTV--GGGDGQPHKSMTDHSTATKRSSKFRGVSRHRWTGRFEAHL 78

Query: 63  WDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIM 122
           WDKG WNPTQRKKGKQ   GAYDEEE AARAYDLAALKYWGTSTFTNF++ DYENEI IM
Sbjct: 79  WDKGYWNPTQRKKGKQVYLGAYDEEELAARAYDLAALKYWGTSTFTNFTVPDYENEINIM 138

Query: 123 KTVTKEEYLASLR 133
           KTVTKEEYLASLR
Sbjct: 139 KTVTKEEYLASLR 149

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BLAST of CsaV3_6G036310 vs. ExPASy Swiss-Prot
Match: Q8GWK2 (AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana OX=3702 GN=At2g41710 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-32
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 38  TATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLA 97
           TA KRSS +RGV+RHRWTGR+EAHLWDK +WN  Q KKGKQ   GAYD+EE+AARAYDLA
Sbjct: 63  TAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLA 122

Query: 98  ALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLRSFMF 137
           ALKYWG  T  NF ++DY  +++ M+ +++EEYLASLR + F
Sbjct: 123 ALKYWGPGTLINFPVTDYTRDLEEMQNLSREEYLASLRRYPF 164

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BLAST of CsaV3_6G036310 vs. ExPASy Swiss-Prot
Match: Q6X5Y6 (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN=WRI1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 9   RRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSW 68
           +R + A  SSP+    GD + H   P    +T+RSS +RGV+RHRWTGRFEAHLWDK SW
Sbjct: 36  KRAKRAKKSSPS----GD-KSHN--PTSPASTRRSSIYRGVTRHRWTGRFEAHLWDKSSW 95

Query: 69  NPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKE 128
           N  Q KKGKQ   GAYD EE+AA  YDLAALKYWG  T  NF    Y  E++ M+ VTKE
Sbjct: 96  NSIQNKKGKQVYLGAYDSEEAAAHTYDLAALKYWGPDTILNFPAETYTKELEEMQRVTKE 155

Query: 129 EYLASLR 133
           EYLASLR
Sbjct: 156 EYLASLR 155

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy Swiss-Prot
Match: A0JPZ8 (AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana OX=3702 GN=At1g79700 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 34  PNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARA 93
           P ++   +RSS +RGV+RHRWTGR+EAHLWDK SWN TQ KKG+Q   GAYDEEE+AARA
Sbjct: 41  PPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARA 100

Query: 94  YDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLR 133
           YDLAALKYWG  T  NF +  Y+ ++K M+  +KEEY+ SLR
Sbjct: 101 YDLAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLR 142

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy Swiss-Prot
Match: X5HYT8 (AP2-like ethylene-responsive transcription factor SMOS1 OS=Oryza sativa subsp. japonica OX=39947 GN=SMOS1 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 64/97 (65.98%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 39  ATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAA 98
           A KRSS +RGV+RHRWTGR+EAHLWDK +WN  Q KKGKQ   GAYD+EE+AARAYDLAA
Sbjct: 83  AGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAA 142

Query: 99  LKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLR 133
           LKYWG  T  NF +SDY  +++ M+ ++KE+YL SLR
Sbjct: 143 LKYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLR 179

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy Swiss-Prot
Match: Q94AN4 (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana OX=3702 GN=At1g16060 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 41  KRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 100
           +RSS  RGV+RHRWTGR+EAHLWDK SWN TQ KKG+Q   GAYDEE++AARAYDLAALK
Sbjct: 54  QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALK 113

Query: 101 YWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLR 133
           YWG  T  NF + +YE +IK M++ +KEEY+ SLR
Sbjct: 114 YWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLR 148

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy TrEMBL
Match: A0A0A0KJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404260 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 18  MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 77

Query: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK 120
           HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK
Sbjct: 78  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK 137

Query: 121 TVTKEEYLASLR 133
           TVTKEEYLASLR
Sbjct: 138 TVTKEEYLASLR 149

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy TrEMBL
Match: A0A5A7SYZ9 (AP2-like ethylene-responsive transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00790 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.4e-63
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSS TVG GGDGQPHK MPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 1   MAAVKGVKRRRRNASSSS-TVGDGGDGQPHKSMPNQSTATKRSSKFRGVSRHRWTGRFEA 60

Query: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMK 120
           HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNF ISDYENEIKIMK
Sbjct: 61  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYENEIKIMK 120

Query: 121 TVTKEEYLASLR 133
           TVTKEEYLASLR
Sbjct: 121 TVTKEEYLASLR 131

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy TrEMBL
Match: A0A1S3C431 (AP2-like ethylene-responsive transcription factor At1g79700 OS=Cucumis melo OX=3656 GN=LOC103496639 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MAAVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 60
           MAAVKGVKRRRRNASSSS TVG GGDGQPHK MPNQSTATKRSSKFRGVSRHRWTGRFEA
Sbjct: 18  MAAVKGVKRRRRNASSSS-TVGDGGDGQPHKSMPNQSTATKRSSKFRGVSRHRWTGRFEA 77

Query: 61  HLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIK 120
           HLWDKGSWNPTQRKKGKQ   GAYDEEESAARAYDLAALKYWGTSTFTNF ISDYENEIK
Sbjct: 78  HLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYENEIK 137

Query: 121 IMKTVTKEEYLASLR 133
           IMKTVTKEEYLASLR
Sbjct: 138 IMKTVTKEEYLASLR 151

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy TrEMBL
Match: A0A6J1DD61 (ethylene-responsive transcription factor WRI1-like OS=Momordica charantia OX=3673 GN=LOC111019289 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 104/135 (77.04%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 3   AVKGVKRRRRNASSSSPTVGG--GGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEA 62
           A+K  KRRRR+ SSS+   G    GDG  HK   ++ST TKRSS+FRGVSRHRWTGRFEA
Sbjct: 19  ALKCKKRRRRSTSSSTLLEGAATSGDGPRHKSQTDRSTTTKRSSRFRGVSRHRWTGRFEA 78

Query: 63  HLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIK 122
           HLWDKGSWNPTQRKKGKQ   GAYDEEESAARAYDLAALKYWGTSTFTNF  SDYE E++
Sbjct: 79  HLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPTSDYEEEVR 138

Query: 123 IMKTVTKEEYLASLR 133
           IMKT+TKEEYLASLR
Sbjct: 139 IMKTMTKEEYLASLR 153

[Close]

BLAST of CsaV3_6G036310 vs. ExPASy TrEMBL
Match: A0A6J1G4W8 (ethylene-responsive transcription factor WRI1-like OS=Cucurbita moschata OX=3662 GN=LOC111450835 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.1e-47
Identity = 104/133 (78.20%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 3   AVKGVKRRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHL 62
           AVK ++RRRR+           G  QP K   +QST TKRSS+FRGVSRHRWTGRFEAHL
Sbjct: 19  AVKCIRRRRRSCK---------GSRQPPKSAADQSTTTKRSSRFRGVSRHRWTGRFEAHL 78

Query: 63  WDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIM 122
           WDKGSWNPTQRKKGKQ   GAYDEEESAARAYDLAALKYWGTSTFTNFS SDYENEIKIM
Sbjct: 79  WDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSASDYENEIKIM 138

Query: 123 KTVTKEEYLASLR 133
           K VTKEEYLASLR
Sbjct: 139 KNVTKEEYLASLR 142

[Close]

BLAST of CsaV3_6G036310 vs. TAIR 10
Match: AT2G41710.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 38  TATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLA 97
           TA KRSS +RGV+RHRWTGR+EAHLWDK +WN  Q KKGKQ   GAYD+EE+AARAYDLA
Sbjct: 63  TAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLA 122

Query: 98  ALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLRSFMF 137
           ALKYWG  T  NF ++DY  +++ M+ +++EEYLASLR + F
Sbjct: 123 ALKYWGPGTLINFPVTDYTRDLEEMQNLSREEYLASLRRYPF 164

[Close]

BLAST of CsaV3_6G036310 vs. TAIR 10
Match: AT2G41710.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-33
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 38  TATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLA 97
           TA KRSS +RGV+RHRWTGR+EAHLWDK +WN  Q KKGKQ   GAYD+EE+AARAYDLA
Sbjct: 63  TAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLA 122

Query: 98  ALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLR 133
           ALKYWG  T  NF ++DY  +++ M+ +++EEYLASLR
Sbjct: 123 ALKYWGPGTLINFPVTDYTRDLEEMQNLSREEYLASLR 160

[Close]

BLAST of CsaV3_6G036310 vs. TAIR 10
Match: AT3G54320.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 9.7e-33
Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 9   RRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSW 68
           +R + A  SSP+    GD + H   P    +T+RSS +RGV+RHRWTGRFEAHLWDK SW
Sbjct: 36  KRAKRAKKSSPS----GD-KSHN--PTSPASTRRSSIYRGVTRHRWTGRFEAHLWDKSSW 95

Query: 69  NPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKE 128
           N  Q KKGKQ   GAYD EE+AA  YDLAALKYWG  T  NF    Y  E++ M+ VTKE
Sbjct: 96  NSIQNKKGKQVYLGAYDSEEAAAHTYDLAALKYWGPDTILNFPAETYTKELEEMQRVTKE 155

Query: 129 EYLASLR 133
           EYLASLR
Sbjct: 156 EYLASLR 155

[Close]

BLAST of CsaV3_6G036310 vs. TAIR 10
Match: AT3G54320.3 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 9.7e-33
Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 9   RRRRNASSSSPTVGGGGDGQPHKLMPNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSW 68
           +R + A  SSP+    GD + H   P    +T+RSS +RGV+RHRWTGRFEAHLWDK SW
Sbjct: 36  KRAKRAKKSSPS----GD-KSHN--PTSPASTRRSSIYRGVTRHRWTGRFEAHLWDKSSW 95

Query: 69  NPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKE 128
           N  Q KKGKQ   GAYD EE+AA  YDLAALKYWG  T  NF    Y  E++ M+ VTKE
Sbjct: 96  NSIQNKKGKQVYLGAYDSEEAAAHTYDLAALKYWGPDTILNFPAETYTKELEEMQRVTKE 155

Query: 129 EYLASLR 133
           EYLASLR
Sbjct: 156 EYLASLR 155

[Close]

BLAST of CsaV3_6G036310 vs. TAIR 10
Match: AT1G79700.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-32
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 34  PNQSTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARA 93
           P ++   +RSS +RGV+RHRWTGR+EAHLWDK SWN TQ KKG+Q   GAYDEEE+AARA
Sbjct: 41  PPRNAPLQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARA 100

Query: 94  YDLAALKYWGTSTFTNFSISDYENEIKIMKTVTKEEYLASLR 133
           YDLAALKYWG  T  NF +  Y+ ++K M+  +KEEY+ SLR
Sbjct: 101 YDLAALKYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLR 142

The following BLAST results are available for this feature:

BLAST of CsaV3_6G036310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647297.1	1.4e-86	100.00	hypothetical protein Csa_004348 [Cucumis sativus]	[more]
XP_031742891.1	1.1e-65	97.78	AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis sativus]	[more]
KAA0036452.1	4.9e-63	96.97	AP2-like ethylene-responsive transcription factor [Cucumis melo var. makuwa] >TY...	[more]
XP_008456799.1	2.1e-61	94.81	PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Cucumis ...	[more]
XP_038885870.1	1.2e-53	85.71	AP2-like ethylene-responsive transcription factor At1g16060 [Benincasa hispida]	[more]

BLAST of CsaV3_6G036310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWK2	1.6e-32	64.71	AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thali...	[more]
Q6X5Y6	1.4e-31	59.06	Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A0JPZ8	4.0e-31	62.75	AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thali...	[more]
X5HYT8	4.0e-31	65.98	AP2-like ethylene-responsive transcription factor SMOS1 OS=Oryza sativa subsp. j...	[more]
Q94AN4	1.5e-30	67.37	AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thali...	[more]

BLAST of CsaV3_6G036310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ57	1.2e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404260 PE=4 SV=1	[more]
A0A5A7SYZ9	2.4e-63	96.97	AP2-like ethylene-responsive transcription factor OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3C431	1.0e-61	94.81	AP2-like ethylene-responsive transcription factor At1g79700 OS=Cucumis melo OX=3...	[more]
A0A6J1DD61	1.4e-47	77.04	ethylene-responsive transcription factor WRI1-like OS=Momordica charantia OX=367...	[more]
A0A6J1G4W8	4.1e-47	78.20	ethylene-responsive transcription factor WRI1-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of CsaV3_6G036310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41710.2	1.1e-33	64.71	Integrase-type DNA-binding superfamily protein	[more]
AT2G41710.1	4.3e-33	66.33	Integrase-type DNA-binding superfamily protein	[more]
AT3G54320.1	9.7e-33	59.06	Integrase-type DNA-binding superfamily protein	[more]
AT3G54320.3	9.7e-33	59.06	Integrase-type DNA-binding superfamily protein	[more]
AT1G79700.1	2.8e-32	62.75	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 45..114 e-value: 6.0E-17 score: 72.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 44..100 e-value: 4.0E-10 score: 39.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 45..108 score: 17.595871
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 44..110 e-value: 3.86323E-17 score: 69.2227
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 44..110 e-value: 4.0E-22 score: 80.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR32467	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	coord: 4..132
None	No IPR available	PANTHER	PTHR32467:SF116	BINDING PROTEIN, PUTATIVE-RELATED	coord: 4..132
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 44..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G036310.1	CsaV3_6G036310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity