Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AAAGCCATGAATTGTAAAAAAAAGAAAAAAGAAAAAAAGGCTTCCAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTGGTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTATCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCCCACTATTCCCCCCCCTTCATAAATGCGACGCCACATTATCCCCTTTCTCTATCAAAATTCATTTCTTAATAACCTAACCTCATATCTAAATTTCAAATAAAGTAGGGAAAAATAAATCTCCCAGTCAGACTCAACATCCCTCATACCTACGCCTTACGCGCTTATTGCACCATTTCCCCCTCTTCTATATTCCTTCTCTCCCCCCATTTTTCTG mRNA sequence ATGAATTGTAAAAAAAAGAAAAAAGAAAAAAAGGCTTCCAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTGGTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTATCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCCCACTATTCCCCCCCCTTCATAAATGCGACGCCACATTATCCCCTTTCTCTATCAAAATTCATTTCTTAATAACCTAA Coding sequence (CDS) ATGAATTGTAAAAAAAAGAAAAAAGAAAAAAAGGCTTCCAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTGGTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTATCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCCCACTATTCCCCCCCCTTCATAAATGCGACGCCACATTATCCCCTTTCTCTATCAAAATTCATTTCTTAATAACCTAA Protein sequence MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICRKNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSPFSIKIHFLIT*
Homology
BLAST of CsaV3_6G015480 vs. NCBI nr
Match: KAE8646928.1 (hypothetical protein Csa_020730 [Cucumis sativus]) HSP 1 Score: 286.2 bits (731), Expect = 1.4e-73 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR 60
MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR
Sbjct: 1 MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR 60
Query: 61 KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSP 120
KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSP
Sbjct: 61 KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSP 120
Query: 121 FSIKIHFLIT 131
FSIKIHFLIT
Sbjct: 121 FSIKIHFLIT 130
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8646928.1 | 1.4e-73 | 100.00 | hypothetical protein Csa_020730 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..32 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
