CsaV3_6G015480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G015480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 11439315 .. 11439850 (-)
RNA-Seq Expression	CsaV3_6G015480
Synteny	CsaV3_6G015480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCCATGAATTGTAAAAAAAAGAAAAAAGAAAAAAAGGCTTCCAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTGGTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTATCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCCCACTATTCCCCCCCCTTCATAAATGCGACGCCACATTATCCCCTTTCTCTATCAAAATTCATTTCTTAATAACCTAACCTCATATCTAAATTTCAAATAAAGTAGGGAAAAATAAATCTCCCAGTCAGACTCAACATCCCTCATACCTACGCCTTACGCGCTTATTGCACCATTTCCCCCTCTTCTATATTCCTTCTCTCCCCCCATTTTTCTG

mRNA sequence

ATGAATTGTAAAAAAAAGAAAAAAGAAAAAAAGGCTTCCAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTGGTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTATCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCCCACTATTCCCCCCCCTTCATAAATGCGACGCCACATTATCCCCTTTCTCTATCAAAATTCATTTCTTAATAACCTAA

Coding sequence (CDS)

ATGAATTGTAAAAAAAAGAAAAAAGAAAAAAAGGCTTCCAAAAGGGGCCCACAAGAGAGGAGTTTCAATGAGGAACCTGGTGGAAATAAAGCGGGCCGGATTTGGCCGAAACTGAAAATGATCCAGGATTGGGACGCGAGAGGGGAAGGGTCCCGGACAAGTGGAGATGCCATCTGTCGAAAGAATGATCCAATAGTTATCGGACACGTTTCACGAGAGTTCGGTGTCCACAAGTTTGACTGTCCCGAGTGGACCCACTGCGACTGGGTTTTATTTAACGCCAAACTGACAACGTGTGCCCCGTTTTGTTGGGGCCCACTATTCCCCCCCCTTCATAAATGCGACGCCACATTATCCCCTTTCTCTATCAAAATTCATTTCTTAATAACCTAA

Protein sequence

MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICRKNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSPFSIKIHFLIT*

Homology

[Close]

BLAST of CsaV3_6G015480 vs. NCBI nr
Match: KAE8646928.1 (hypothetical protein Csa_020730 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 1.4e-73
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR 60
           MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR
Sbjct: 1   MNCKKKKKEKKASKRGPQERSFNEEPGGNKAGRIWPKLKMIQDWDARGEGSRTSGDAICR 60

Query: 61  KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSP 120
           KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSP
Sbjct: 61  KNDPIVIGHVSREFGVHKFDCPEWTHCDWVLFNAKLTTCAPFCWGPLFPPLHKCDATLSP 120

Query: 121 FSIKIHFLIT 131
           FSIKIHFLIT
Sbjct: 121 FSIKIHFLIT 130

The following BLAST results are available for this feature:

BLAST of CsaV3_6G015480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646928.1	1.4e-73	100.00	hypothetical protein Csa_020730 [Cucumis sativus]	[more]

BLAST of CsaV3_6G015480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G015480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G015480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G015480.1	CsaV3_6G015480.1	mRNA