CsaV3_6G002960 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G002960
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 2163949 .. 2164490 (+)
RNA-Seq Expression	CsaV3_6G002960
Synteny	CsaV3_6G002960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCATGAGCGTCGTAGCCAATGTTTGTAAACGAGTTCTCGTCACAGTTCTTTGTGGTATTTTTGTTTTGTTGGTTTCTCATACTATTGCTGTGTTTGCATTGTTCTTGATTGTCTTGCCATTTGGGAAAGTTGATGGAACATCAATGGGTGTGGCTTTCGTTTTTTACTTTGTTGGGTTGTTGTGTTTGGTAGTGGTGTTACAATTGGCTGGTGTTGTTTCTATTTTGGAAGAGTTTTGTGGGTTTAAAGCCATGGGCGAAGAGTAGTTTGCTCTTGAAGGAAAGGATGGTATCGGCGACAGTAATGCGTTGGCAATTTATTCGGGTTTGGGGATTTTTCTATGGTTAGAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

mRNA sequence

ATGGACACCATGAGCGTCGTAGCCAATGTTTGTAAACGAGTTCTCGTCACAGTTCTTTGTGGTATTTTTGTTTTGTTGGTTTCTCATACTATTGCTGTGTTTGCATTGTTCTTGATTGTCTTGCCATTTGGGAAAGTTGATGGAACATCAATGGGTGTGGCTTTCGTTTTTTACTTTGTTGGGTTGTTGTGTTTGGTAGTGGTGTTACAATTGGCTGGTGTTGTTTCTATTTTGGAAGAGTTTTGTGGGTTTAAAGCCATGGGCGAAGAAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

Coding sequence (CDS)

ATGGACACCATGAGCGTCGTAGCCAATGTTTGTAAACGAGTTCTCGTCACAGTTCTTTGTGGTATTTTTGTTTTGTTGGTTTCTCATACTATTGCTGTGTTTGCATTGTTCTTGATTGTCTTGCCATTTGGGAAAGTTGATGGAACATCAATGGGTGTGGCTTTCGTTTTTTACTTTGTTGGGTTGTTGTGTTTGGTAGTGGTGTTACAATTGGCTGGTGTTGTTTCTATTTTGGAAGAGTTTTGTGGGTTTAAAGCCATGGGCGAAGAAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

Protein sequence

MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVGLLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYLI*

Homology

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BLAST of CsaV3_6G002960 vs. NCBI nr
Match: KGN45907.2 (hypothetical protein Csa_005633 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60
           MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV
Sbjct: 1   MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60

Query: 61  GLLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDNAFFVGNVDECIEQFVITTVDFGL 120
           GLLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDNAFFVGNVDECIEQFVITTVDFGL
Sbjct: 61  GLLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDNAFFVGNVDECIEQFVITTVDFGL 120

Query: 121 PIMEARVGDDVLFRLQIVSSSESIYTSDYLI 152
           PIMEARVGDDVLFRLQIVSSSESIYTSDYLI
Sbjct: 121 PIMEARVGDDVLFRLQIVSSSESIYTSDYLI 151

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BLAST of CsaV3_6G002960 vs. NCBI nr
Match: XP_038885960.1 (uncharacterized protein LOC120076263 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMS+VA V KRVLVT LC + V LV H IA FA FLIVLPFGKVD  +  VAFVFYFVG
Sbjct: 85  DTMSLVAKVWKRVLVTFLCVLLVFLVYHIIAGFAFFLIVLPFGKVDEITFSVAFVFYFVG 144

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKD 97
           LL LVV  QLAGVVS+LEE CGFKA+ +     KD
Sbjct: 145 LLYLVVAFQLAGVVSVLEESCGFKALAKSRLLLKD 179

[Close]

BLAST of CsaV3_6G002960 vs. NCBI nr
Match: XP_011658385.2 (uncharacterized protein LOC105435982 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G VD T++GVAFVFYFVG
Sbjct: 85  DTMSVVVKVWKRLLVTNLCVILVFLIYHMIVGLALFIIILPLGTVDRTTLGVAFVFYFVG 144

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQLAGVVS+LEE  GFKAM +     K+N
Sbjct: 145 LLYLVVVLQLAGVVSVLEESRGFKAMAKSRLLLKEN 180

[Close]

BLAST of CsaV3_6G002960 vs. NCBI nr
Match: KAE8646597.1 (hypothetical protein Csa_005461 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G VD T++GVAFVFYFVG
Sbjct: 117 DTMSVVVKVWKRLLVTNLCVILVFLIYHMIVGLALFIIILPLGTVDRTTLGVAFVFYFVG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQLAGVVS+LEE  GFKAM +     K+N
Sbjct: 177 LLYLVVVLQLAGVVSVLEESRGFKAMAKSRLLLKEN 212

[Close]

BLAST of CsaV3_6G002960 vs. NCBI nr
Match: XP_038885959.1 (uncharacterized protein LOC120076262 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-19
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTM+VVA V KRVLVT +C + V LV H IA FAL+LIVLP GK+D T+ GVAFVFYFVG
Sbjct: 116 DTMNVVAKVWKRVLVTFICVLLVFLVYHIIAGFALYLIVLPLGKLDETTSGVAFVFYFVG 175

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKD 97
            L LVVV QLAGVVS+LEE  GFKA+ +     KD
Sbjct: 176 WLYLVVVFQLAGVVSVLEESYGFKALAKSRLLLKD 210

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BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL
Match: A0A0A0K815 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020190 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.5e-37
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60
          MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV
Sbjct: 1  MDTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFV 60

Query: 61 GLLCLVVVLQLAGVVSILEEFCGFKAMGEE 91
          GLLCLVVVLQLAGVVSILEEFCGFKAMGEE
Sbjct: 61 GLLCLVVVLQLAGVVSILEEFCGFKAMGEE 90

[Close]

BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL
Match: A0A0A0KDQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020200 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 91  GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL 150
           GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL
Sbjct: 4   GFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYL 63

Query: 151 I 152
           I
Sbjct: 64  I 64

[Close]

BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL
Match: A0A0A0K819 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020230 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           DTMSVV  V KR+LVT LC I V L+ H I   ALF+I+LP G VD T++GVAFVFYFVG
Sbjct: 43  DTMSVVVKVWKRLLVTNLCVILVFLIYHMIVGLALFIIILPLGTVDRTTLGVAFVFYFVG 102

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQLAGVVS+LEE  GFKAM +     K+N
Sbjct: 103 LLYLVVVLQLAGVVSVLEESRGFKAMAKSRLLLKEN 138

[Close]

BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL
Match: A0A5D3DZ60 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00100 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           D MSVV  V KR+LVT LC I V  + H I   ALF+I+LP GKVD T++GVAFVFYFVG
Sbjct: 117 DIMSVVVKVWKRLLVTFLCVILVFFIYHMIVGLALFIIILPLGKVDRTTLGVAFVFYFVG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQL+GVVS+LEE  GFKAM +     K+N
Sbjct: 177 LLYLVVVLQLSGVVSVLEESSGFKAMAKSRLLLKEN 212

[Close]

BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL
Match: A0A1S3CMT6 (uncharacterized protein LOC103502262 OS=Cucumis melo OX=3656 GN=LOC103502262 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 2   DTMSVVANVCKRVLVTVLCGIFVLLVSHTIAVFALFLIVLPFGKVDGTSMGVAFVFYFVG 61
           D MSVV  V KR+LVT LC I V  + H I   ALF+I+LP GKVD T++GVAFVFYFVG
Sbjct: 117 DIMSVVVKVWKRLLVTFLCVILVFFIYHMIVGLALFIIILPLGKVDRTTLGVAFVFYFVG 176

Query: 62  LLCLVVVLQLAGVVSILEEFCGFKAMGEEGFCYKDN 98
           LL LVVVLQL+GVVS+LEE  GFKAM +     K+N
Sbjct: 177 LLYLVVVLQLSGVVSVLEESSGFKAMAKSRLLLKEN 212

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45907.2	2.2e-73	100.00	hypothetical protein Csa_005633 [Cucumis sativus]	[more]
XP_038885960.1	1.6e-20	68.42	uncharacterized protein LOC120076263 [Benincasa hispida]	[more]
XP_011658385.2	2.4e-19	65.63	uncharacterized protein LOC105435982 [Cucumis sativus]	[more]
KAE8646597.1	2.4e-19	65.63	hypothetical protein Csa_005461 [Cucumis sativus]	[more]
XP_038885959.1	4.0e-19	66.32	uncharacterized protein LOC120076262 [Benincasa hispida]	[more]

BLAST of CsaV3_6G002960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K815	3.5e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020190 PE=4 SV=1	[more]
A0A0A0KDQ0	1.4e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020200 PE=4 SV=1	[more]
A0A0A0K819	1.1e-19	65.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020230 PE=4 SV=1	[more]
A0A5D3DZ60	2.6e-19	63.54	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CMT6	2.6e-19	63.54	uncharacterized protein LOC103502262 OS=Cucumis melo OX=3656 GN=LOC103502262 PE=...	[more]

BLAST of CsaV3_6G002960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133	OS08G0107100 PROTEIN-RELATED	coord: 2..89
None	No IPR available	PANTHER	PTHR33133:SF51	PROTEIN, PUTATIVE-RELATED	coord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002960.1	CsaV3_6G002960.1	mRNA